Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 7.4e-46 187.6 109 100.0
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 3.9e-15 85.5 60 70.0
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 6.7e-15 84.7 61 67.2
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 8.8e-15 84.3 103 58.3
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.0e-14 83.2 40 92.5
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 3.3e-14 82.4 106 49.1
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 4.4e-14 82.0 107 62.6
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.7e-14 81.6 62 64.5
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 5.7e-14 81.6 62 64.5
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.7e-14 80.9 40 87.5
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.7e-14 80.9 62 66.1
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 9.7e-14 80.9 62 64.5
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.7e-13 80.1 62 64.5
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.7e-13 80.1 41 85.4
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.7e-13 80.1 60 70.0
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.8e-13 79.3 58 67.2
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 2.8e-13 79.3 40 87.5
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.8e-13 79.3 44 84.1
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.8e-13 79.3 40 85.0
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.7e-13 79.0 53 73.6
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 3.7e-13 79.0 40 85.0
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 3.7e-13 79.0 36 97.2
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 4.8e-13 78.6 39 87.2
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 6.3e-13 78.2 60 68.3
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.3e-13 78.2 59 61.0
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 6.3e-13 78.2 46 73.9
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 6.3e-13 78.2 109 53.2
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 6.3e-13 78.2 55 70.9
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 6.3e-13 78.2 39 84.6
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.1e-12 77.4 54 70.4
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.1e-12 77.4 52 71.2
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.1e-12 77.4 46 71.7
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.1e-12 77.4 52 76.9
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.1e-12 77.4 60 66.7
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.1e-12 77.4 40 87.5
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.4e-12 77.0 53 73.6
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.8e-12 76.6 109 45.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.8e-12 76.6 39 89.7
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.8e-12 76.6 36 91.7
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.8e-12 76.6 36 91.7
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.8e-12 76.6 44 79.5
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 2.4e-12 76.3 41 90.2
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 2.4e-12 76.3 40 85.0
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.4e-12 76.3 40 87.5
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 3.1e-12 75.9 55 67.3
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 3.1e-12 75.9 52 69.2
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 3.1e-12 75.9 105 45.7
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 3.1e-12 75.9 40 80.0
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 3.1e-12 75.9 40 85.0
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 3.1e-12 75.9 40 85.0
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 3.1e-12 75.9 40 85.0
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 3.1e-12 75.9 63 65.1
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 3.1e-12 75.9 106 55.7
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 4.1e-12 75.5 49 77.6
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 4.1e-12 75.5 40 77.5
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 4.1e-12 75.5 41 78.0
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 4.1e-12 75.5 40 85.0
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 5.3e-12 75.1 51 70.6
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 5.3e-12 75.1 40 82.5
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 5.3e-12 75.1 61 65.6
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 7.0e-12 74.7 51 70.6
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 7.0e-12 74.7 51 70.6
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 7.0e-12 74.7 51 70.6
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 7.0e-12 74.7 51 70.6
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 7.0e-12 74.7 39 87.2
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 7.0e-12 74.7 39 87.2
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.0e-12 74.7 36 88.9
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 7.0e-12 74.7 59 64.4
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 7.0e-12 74.7 40 85.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 7.0e-12 74.7 57 57.9
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 7.0e-12 74.7 36 94.4
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 9.1e-12 74.3 35 97.1
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 9.1e-12 74.3 35 97.1
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 9.1e-12 74.3 112 47.3
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 9.1e-12 74.3 112 47.3
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 9.1e-12 74.3 35 97.1
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.2e-11 73.9 57 66.7
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-11 73.9 37 86.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.2e-11 73.9 33 100.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.6e-11 73.6 37 86.5
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.6e-11 73.6 43 83.7
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.6e-11 73.6 37 86.5
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.6e-11 73.6 37 86.5
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.6e-11 73.6 37 86.5
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.6e-11 73.6 50 72.0
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.6e-11 73.6 40 82.5
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.6e-11 73.6 53 69.8
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.0e-11 73.2 45 77.8
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.0e-11 73.2 37 86.5
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.0e-11 73.2 99 43.4
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.0e-11 73.2 99 43.4
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 2.0e-11 73.2 36 91.7
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 2.0e-11 73.2 53 69.8
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.0e-11 73.2 36 91.7
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 2.0e-11 73.2 36 88.9
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 2.6e-11 72.8 40 72.5
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 2.6e-11 72.8 50 70.0
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 2.6e-11 72.8 36 86.1
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 2.6e-11 72.8 59 64.4
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 3.5e-11 72.4 117 41.9
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.5e-11 72.4 58 56.9
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 5.9e-11 71.6 61 62.3
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 7.7e-11 71.2 37 83.8
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 7.7e-11 71.2 36 83.3
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.0e-10 70.9 36 88.9
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.0e-10 70.9 37 83.8
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 1.3e-10 70.5 58 62.1
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.3e-10 70.5 58 62.1
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.7e-10 70.1 39 82.1
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.2e-10 69.7 33 90.9
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.9e-10 69.3 33 87.9
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 2.9e-10 69.3 40 80.0
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 2.9e-10 69.3 40 80.0
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 3.8e-10 68.9 33 87.9
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 3.8e-10 68.9 62 56.5
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 5.0e-10 68.6 54 64.8
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 6.5e-10 68.2 56 58.9
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 6.5e-10 68.2 33 87.9
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 6.5e-10 68.2 33 87.9
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.1e-09 67.4 33 87.9
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.5e-09 67.0 113 45.1
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 2.5e-09 66.2 40 72.5
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 4.2e-09 65.5 42 73.8
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 7.2e-09 64.7 77 51.9
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 4.7e-08 62.0 33 78.8
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 2.6e-06 56.2 40 60.0


User provided reference genes

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