Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.3e-203 711.1 350 100.0
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.3e-103 380.6 225 79.6
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.2e-101 374.0 251 72.1
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.1e-100 369.4 223 78.0
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.4e-97 359.8 219 78.1
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.2e-97 359.4 215 78.1
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 5.1e-95 352.1 229 77.7
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.8e-92 343.6 243 70.8
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.1e-92 342.8 254 70.1
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 3.1e-92 342.8 251 66.5
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 4.0e-92 342.4 243 70.4
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.5e-91 340.5 261 67.4
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.0e-91 340.1 243 70.0
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 7.6e-91 338.2 230 73.5
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 9.9e-91 337.8 230 73.0
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 9.9e-91 337.8 263 64.6
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.7e-90 337.0 254 66.9
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.7e-90 337.0 223 74.4
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.2e-90 336.7 238 70.2
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 2.9e-90 336.3 262 66.4
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.8e-90 335.9 260 66.2
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.8e-90 335.9 252 68.7
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 4.9e-90 335.5 219 73.5
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 4.9e-90 335.5 219 73.5
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.9e-89 333.6 258 67.1
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 2.4e-89 333.2 245 69.0
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.2e-89 332.8 226 72.6
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.2e-89 332.8 242 70.2
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 4.2e-89 332.4 226 73.5
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 5.4e-89 332.0 238 68.9
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 7.1e-89 331.6 213 75.1
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 9.3e-89 331.3 216 74.5
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.2e-88 330.9 214 76.2
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-88 330.1 258 65.5
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-88 330.1 258 65.5
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 2.1e-88 330.1 258 65.5
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.1e-88 330.1 267 64.4
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 2.1e-88 330.1 224 72.3
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 6.0e-88 328.6 246 67.1
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 7.8e-88 328.2 219 74.0
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 7.8e-88 328.2 213 76.1
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.0e-87 327.8 243 67.9
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.0e-87 327.8 230 71.7
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.0e-87 327.8 230 71.7
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.0e-87 327.8 238 68.5
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.0e-87 326.2 226 69.9
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.0e-87 326.2 236 68.6
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.0e-87 326.2 230 70.4
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.1e-86 324.3 229 69.4
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.5e-86 323.9 219 73.1
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.9e-86 323.6 248 66.1
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.9e-86 323.6 248 67.3
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 4.3e-86 322.4 230 69.6
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 7.3e-86 321.6 213 74.6
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 7.3e-86 321.6 219 70.8
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 7.3e-86 321.6 219 70.8
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 7.3e-86 321.6 252 64.7
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 9.6e-86 321.2 246 65.4
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 9.6e-86 321.2 247 65.6
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 9.6e-86 321.2 247 65.6
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.3e-85 320.9 219 74.0
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.6e-85 320.5 213 74.2
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.6e-85 320.5 224 69.2
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.6e-85 320.5 219 70.3
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-85 320.1 264 61.7
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.1e-85 320.1 236 67.4
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.1e-85 320.1 241 66.4
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 2.8e-85 319.7 212 74.5
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.6e-85 319.3 244 67.6
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 3.6e-85 319.3 268 63.1
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.6e-85 319.3 224 69.6
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 3.6e-85 319.3 246 65.4
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 4.8e-85 318.9 247 65.2
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 6.2e-85 318.5 219 71.2
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 6.2e-85 318.5 212 75.0
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.1e-84 317.8 235 67.2
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-84 317.8 213 72.3
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.8e-84 317.0 210 72.9
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.8e-84 317.0 224 71.0
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.4e-84 316.6 238 66.4
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 2.4e-84 316.6 238 66.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 3.1e-84 316.2 245 66.1
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 5.3e-84 315.5 245 65.7
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 9.0e-84 314.7 211 73.0
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.2e-83 314.3 208 74.5
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.5e-83 313.9 241 66.4
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.0e-83 313.5 247 65.6
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 2.6e-83 313.2 225 68.9
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.6e-83 311.6 241 66.0
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 7.6e-83 311.6 260 63.1
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 9.9e-83 311.2 230 67.0
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 9.9e-83 311.2 239 66.1
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.3e-82 310.8 229 69.9
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.3e-82 310.8 256 62.5
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 1.3e-82 310.8 213 70.9
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 2.9e-82 309.7 258 60.9
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 2.9e-82 309.7 248 65.7
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 6.4e-82 308.5 229 69.9
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 6.4e-82 308.5 229 69.9
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 6.4e-82 308.5 213 70.4
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 8.4e-82 308.1 246 65.0
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 8.4e-82 308.1 232 67.7
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.1e-81 307.8 249 62.7
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.9e-81 307.0 211 71.6
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 2.4e-81 306.6 216 70.4
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 5.4e-81 305.4 248 62.9
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 5.4e-81 305.4 224 66.5
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 7.1e-81 305.1 228 63.6
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 7.1e-81 305.1 251 62.9
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.2e-80 304.3 244 61.9
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 2.7e-80 303.1 257 60.7
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.7e-80 303.1 216 70.8
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 4.6e-80 302.4 257 60.7
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 4.6e-80 302.4 257 60.7
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 6.0e-80 302.0 217 66.8
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.0e-79 301.2 257 60.7
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 5.6e-78 295.4 257 59.5
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 7.4e-78 295.0 203 71.9
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 9.6e-78 294.7 243 60.5
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.6e-77 293.9 243 60.5
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.1e-77 293.5 257 59.5
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.8e-77 293.1 257 59.1
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.7e-77 292.7 211 70.1
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 3.1e-76 289.7 215 67.0
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.3e-76 288.9 211 68.7
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 6.9e-76 288.5 213 67.6
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.6e-75 286.6 211 68.2
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.3e-74 284.3 213 68.1
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.3e-74 284.3 174 78.7
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.9e-73 280.4 221 63.3
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.6e-72 275.8 233 58.8
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.0e-71 274.6 206 66.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.5e-70 270.8 189 68.3
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.9e-70 270.4 176 75.6
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-69 267.7 227 58.6
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-68 263.8 223 57.8
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.8e-68 263.8 223 57.8
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 5.3e-68 262.3 223 57.4
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 5.3e-68 262.3 223 57.4
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 5.3e-68 262.3 223 57.4
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.6e-67 260.0 218 61.9
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.9e-65 253.8 202 62.9
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 9.0e-60 235.0 213 57.3
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.7e-59 231.9 296 48.6
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.2e-58 230.3 228 54.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.4e-57 227.6 195 57.4
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 4.2e-57 226.1 249 52.6
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.0e-55 221.5 142 75.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 3.0e-55 219.9 142 74.6
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.3e-54 216.1 223 51.6
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 2.6e-51 206.8 132 75.0
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 5.5e-49 199.1 212 49.1
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-46 191.4 220 48.6
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-46 191.0 213 48.8
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 9.4e-41 171.8 181 51.4
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 7.4e-38 162.2 160 48.1
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 3.1e-36 156.8 176 53.4
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.0e-26 122.9 75 77.3
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 4.5e-19 99.8 94 56.4
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.1e-17 95.1 65 64.6
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.1e-12 78.6 89 46.1
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.4e-12 77.4 73 54.8
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 5.4e-12 76.3 71 53.5
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 4.5e-11 73.2 64 56.2
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 3.6e-08 63.5 44 70.5
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 6.1e-08 62.8 81 45.7
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.6e-06 57.4 40 67.5


User provided reference genes

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