Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 2.1e-76 288.9 138 100.0
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 1.0e-19 100.5 151 41.7
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 1.8e-19 99.8 152 39.5
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 1.2e-18 97.1 161 37.9
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 1.5e-18 96.7 150 42.0
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 2.6e-18 95.9 155 43.2
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 7.5e-18 94.4 162 39.5
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 7.5e-18 94.4 155 41.9
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 9.8e-18 94.0 154 37.7
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.9e-17 91.7 151 37.7
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 6.4e-17 91.3 159 35.8
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.9e-16 89.7 167 41.3
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 1.9e-16 89.7 155 38.7
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 1.9e-16 89.7 151 39.1
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.4e-16 89.4 152 38.2
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 3.2e-16 89.0 154 39.0
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 3.2e-16 89.0 152 38.8
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 7.0e-16 87.8 142 43.0
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 9.2e-16 87.4 155 38.1
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.6e-15 86.7 152 37.5
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.0e-15 86.3 152 38.2
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 2.0e-15 86.3 154 38.3
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 2.7e-15 85.9 163 37.4
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 3.5e-15 85.5 154 38.3
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 4.6e-15 85.1 154 39.6
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 6.0e-15 84.7 154 37.0
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 7.8e-15 84.3 159 35.2
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 1.7e-14 83.2 152 38.8
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 1.7e-14 83.2 148 39.2
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.7e-14 83.2 152 40.1
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 2.3e-14 82.8 154 38.3
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 2.3e-14 82.8 157 36.3
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 3.0e-14 82.4 163 35.0
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 3.0e-14 82.4 166 34.9
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 3.0e-14 82.4 154 36.4
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 3.9e-14 82.0 150 38.7
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 3.9e-14 82.0 164 37.2
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 3.9e-14 82.0 154 36.4
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 5.0e-14 81.6 150 38.7
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 5.0e-14 81.6 164 34.1
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 6.6e-14 81.3 151 39.7
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 8.6e-14 80.9 157 35.7
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 1.1e-13 80.5 160 33.1
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 1.1e-13 80.5 102 40.2
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 1.5e-13 80.1 157 36.9
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 1.9e-13 79.7 103 46.6
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 1.9e-13 79.7 155 33.5
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 1.9e-13 79.7 157 36.3
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 3.3e-13 79.0 145 37.2
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 3.3e-13 79.0 102 41.2
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 3.3e-13 79.0 94 44.7
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 4.3e-13 78.6 152 38.8
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 1.2e-12 77.0 160 37.5
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 1.2e-12 77.0 157 35.0
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.6e-12 76.6 113 45.1
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 2.8e-12 75.9 154 35.1
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 3.6e-12 75.5 64 59.4
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.8e-11 73.2 150 33.3
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.8e-11 73.2 150 33.3
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.8e-11 73.2 150 33.3
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 3.1e-11 72.4 154 33.8
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 3.1e-11 72.4 150 32.7
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 3.1e-11 72.4 150 32.7
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 3.1e-11 72.4 88 47.7
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 3.1e-11 72.4 152 39.5
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 3.1e-11 72.4 150 36.7
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 3.1e-11 72.4 153 35.9
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 4.0e-11 72.0 65 56.9
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 4.0e-11 72.0 65 56.9
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 4.0e-11 72.0 137 32.8
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 5.2e-11 71.6 148 33.1
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 6.8e-11 71.2 162 36.4
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 8.9e-11 70.9 150 32.0
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 1.2e-10 70.5 153 31.4
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 2.0e-10 69.7 133 35.3
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 2.0e-10 69.7 112 37.5
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 2.0e-10 69.7 67 50.7
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 3.4e-10 68.9 113 42.5
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 3.4e-10 68.9 151 34.4
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 3.4e-10 68.9 64 54.7
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 5.8e-10 68.2 133 33.8
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 5.8e-10 68.2 64 54.7
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 9.8e-10 67.4 153 34.6
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.7e-09 66.6 163 31.3
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 2.2e-09 66.2 154 30.5
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 4.9e-09 65.1 148 35.1
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 1.4e-08 63.5 72 50.0
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 2.4e-08 62.8 152 34.2
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 3.2e-08 62.4 117 35.9
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 2.1e-07 59.7 129 32.6
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 3.5e-07 58.9 123 34.1
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 6.0e-07 58.2 65 47.7
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 6.0e-07 58.2 44 61.4
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 2.3e-06 56.2 123 32.5
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 6.6e-06 54.7 68 45.6
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 6.6e-06 54.7 144 33.3


User provided reference genes

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