Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 3.0e-151 538.5 277 100.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 3.8e-93 345.5 280 68.2
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.3e-72 277.3 263 58.9
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 6.2e-72 275.0 252 61.5
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.5e-68 263.1 285 54.4
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-66 256.9 288 54.2
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.4e-63 247.3 285 52.3
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 2.0e-62 243.4 255 56.9
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 8.7e-58 228.0 283 51.9
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 9.0e-55 218.0 285 48.4
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.7e-53 213.8 284 46.5
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.4e-52 210.7 287 47.0
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.9e-52 210.3 289 45.7
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 9.4e-52 208.0 286 45.1
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.1e-51 206.8 203 59.1
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.7e-51 206.5 285 45.6
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.4e-50 204.1 285 45.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.4e-50 204.1 295 44.4
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.8e-50 203.8 289 43.9
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.3e-50 203.4 288 44.4
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 3.9e-50 202.6 291 44.3
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 3.9e-50 202.6 290 44.5
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.1e-49 201.1 289 44.6
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.5e-49 200.7 288 44.4
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.5e-49 200.7 288 44.1
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 7.4e-49 198.4 274 47.1
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 9.7e-49 198.0 288 43.8
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.3e-48 197.6 325 40.9
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.2e-48 196.8 288 43.1
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.8e-48 195.7 264 46.2
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.1e-47 193.0 284 43.0
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 9.1e-47 191.4 295 46.8
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.2e-46 191.0 293 42.3
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.5e-46 190.7 286 42.7
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 5.9e-46 188.7 284 43.0
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 2.9e-45 186.4 290 41.0
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.4e-44 184.1 288 41.3
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 5.5e-44 182.2 287 42.2
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 7.2e-44 181.8 289 41.9
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 7.2e-44 181.8 270 47.4
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 9.4e-44 181.4 286 42.0
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 9.4e-44 181.4 286 42.0
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.7e-43 179.9 286 41.3
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 6.1e-43 178.7 286 41.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 6.1e-43 178.7 259 43.6
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 7.9e-43 178.3 287 41.5
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 7.9e-43 178.3 297 44.4
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.3e-42 176.8 311 42.8
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 5.2e-42 175.6 284 42.6
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 8.8e-42 174.9 350 38.3
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.5e-41 174.1 292 40.4
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.0e-41 173.7 286 41.6
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.6e-41 173.3 262 43.1
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 3.3e-41 172.9 290 42.1
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.3e-41 172.9 281 40.9
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 3.3e-41 172.9 283 43.8
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.3e-40 171.0 258 41.9
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 3.7e-40 169.5 289 40.5
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 8.2e-40 168.3 294 41.8
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.4e-39 167.5 262 41.6
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 1.4e-39 167.5 332 39.5
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 4.1e-39 166.0 286 40.9
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 5.3e-39 165.6 373 35.4
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 3.5e-38 162.9 230 45.2
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.5e-38 162.9 209 49.3
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 7.7e-38 161.8 286 39.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 2.9e-37 159.8 291 39.5
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.8e-37 159.5 262 40.5
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.5e-36 157.5 282 37.9
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.9e-36 157.1 283 40.6
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.9e-36 157.1 205 46.8
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.9e-36 157.1 292 38.7
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.2e-36 156.4 319 37.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.2e-36 156.0 283 40.3
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.7e-35 153.3 207 48.3
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.7e-35 153.3 269 40.5
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 6.1e-35 152.1 239 41.4
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.0e-34 151.4 262 40.8
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.4e-34 151.0 319 37.0
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.4e-34 151.0 246 41.5
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-34 150.6 166 54.8
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 5.2e-34 149.1 281 38.4
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 6.7e-34 148.7 187 47.6
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 6.7e-34 148.7 239 41.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 8.8e-34 148.3 234 41.5
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.0e-33 147.1 335 35.8
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 2.6e-33 146.7 296 36.8
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 3.3e-33 146.4 198 44.9
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 5.7e-33 145.6 292 39.4
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.5e-33 145.2 382 32.2
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.3e-32 144.4 298 35.2
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.3e-32 144.4 284 39.1
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.3e-32 144.4 214 43.5
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.7e-32 144.1 317 34.7
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.7e-32 144.1 317 34.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 2.2e-32 143.7 205 46.8
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.4e-31 141.0 224 42.4
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.8e-31 140.6 133 57.9
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 3.1e-31 139.8 292 36.6
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 4.1e-31 139.4 206 43.2
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.7e-30 136.7 395 31.1
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 4.5e-30 136.0 332 33.7
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 5.9e-30 135.6 298 35.2
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.0e-29 134.8 282 35.5
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.3e-29 134.4 295 34.6
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.9e-29 133.3 237 40.1
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 3.8e-29 132.9 228 41.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.8e-29 132.9 262 37.0
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 5.0e-29 132.5 282 35.1
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 5.0e-29 132.5 282 35.1
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-28 131.3 167 44.9
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.5e-28 131.0 282 34.8
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 9.4e-28 128.3 294 34.4
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 4.7e-27 125.9 291 34.7
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 8.0e-27 125.2 292 37.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.8e-26 124.0 167 47.3
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 8.3e-24 115.2 250 36.4
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 4.1e-23 112.8 210 39.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 2.7e-22 110.2 157 43.9
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.9e-21 106.7 297 33.7
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 8.5e-21 105.1 253 34.8
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.5e-20 104.4 272 34.2
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.5e-20 103.6 252 34.9
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 7.2e-20 102.1 109 54.1
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.2e-19 101.3 304 30.6
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.2e-19 101.3 274 31.4
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.2e-19 101.3 248 34.3
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 2.1e-19 100.5 221 35.3
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 6.1e-19 99.0 226 33.2
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 8.0e-19 98.6 288 30.6
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.4e-18 97.8 139 42.4
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 5.2e-18 95.9 176 36.9
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 4.4e-17 92.8 299 29.4
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.3e-16 91.3 300 31.0
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 4.9e-16 89.4 173 35.8
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 6.3e-16 89.0 304 28.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.0e-14 84.0 272 29.0
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.3e-13 81.3 83 53.0
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 2.3e-13 80.5 85 49.4
AUR62005612 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.5e-12 77.0 59 64.4
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 9.5e-12 75.1 107 43.9
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.4e-10 71.2 69 53.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 8.3e-08 62.0 132 35.6
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 7.0e-07 58.9 89 41.6
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 2.7e-06 57.0 144 32.6
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 2.7e-06 57.0 120 35.8
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 7.8e-06 55.5 77 45.5


User provided reference genes

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