Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 1.4e-178 629.4 308 100.0
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 5.8e-111 404.8 313 66.8
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 4.9e-110 401.7 316 66.8
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 5.4e-109 398.3 309 66.7
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 6.0e-108 394.8 303 67.7
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 1.6e-105 386.7 308 62.7
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 2.8e-105 386.0 224 80.4
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 3.6e-105 385.6 312 63.8
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 8.1e-105 384.4 310 63.2
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 1.1e-104 384.0 311 62.4
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.8e-104 383.3 306 65.0
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 3.1e-104 382.5 309 62.5
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 4.0e-104 382.1 317 64.4
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 6.9e-104 381.3 252 70.6
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.2e-103 380.6 253 73.1
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.2e-103 380.6 311 62.4
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.3e-102 377.1 241 73.4
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.7e-102 376.7 259 70.3
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 3.8e-102 375.6 305 63.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 3.8e-102 375.6 231 78.4
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 4.9e-102 375.2 221 80.5
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 6.4e-102 374.8 303 64.7
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 6.4e-102 374.8 258 71.3
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 6.4e-102 374.8 258 71.3
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 1.4e-101 373.6 297 64.3
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 1.4e-101 373.6 311 62.4
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 2.4e-101 372.9 279 65.2
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 5.4e-101 371.7 229 78.2
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 5.4e-101 371.7 236 74.2
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 7.1e-101 371.3 250 71.6
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 9.3e-101 370.9 218 78.9
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.1e-100 369.8 272 68.4
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 2.1e-100 369.8 218 78.0
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 6.0e-100 368.2 248 70.6
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.0e-99 367.5 303 61.1
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 2.3e-99 366.3 256 67.2
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.3e-99 366.3 259 70.3
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 3.0e-99 365.9 292 63.4
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 5.1e-99 365.2 287 63.8
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 5.1e-99 365.2 328 57.9
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 5.1e-99 365.2 221 77.4
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.1e-98 364.0 292 62.7
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 1.1e-98 364.0 251 70.9
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.5e-98 363.6 212 78.8
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 1.5e-98 363.6 256 71.9
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.9e-98 363.2 234 73.9
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 2.5e-98 362.8 338 56.5
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 5.6e-98 361.7 223 77.1
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 5.6e-98 361.7 288 63.2
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 7.4e-98 361.3 308 62.7
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.6e-98 360.9 292 62.7
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 9.6e-98 360.9 271 67.5
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 9.6e-98 360.9 268 67.5
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 1.3e-97 360.5 311 61.1
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 1.3e-97 360.5 228 73.7
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 3.7e-97 359.0 221 73.8
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 3.7e-97 359.0 221 76.5
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 8.1e-97 357.8 243 70.4
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.1e-96 357.5 271 64.9
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 1.8e-96 356.7 220 74.1
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.8e-96 356.7 255 68.2
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.0e-96 355.5 292 62.0
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.3e-96 355.1 221 72.4
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 6.9e-96 354.8 224 74.6
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 9.0e-96 354.4 224 74.1
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 2.0e-95 353.2 218 74.3
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 2.0e-95 353.2 221 73.3
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 5.8e-95 351.7 301 61.8
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 9.9e-95 350.9 241 68.0
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 9.9e-95 350.9 268 66.8
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 1.3e-94 350.5 327 58.7
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 1.7e-94 350.1 318 56.3
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 2.9e-94 349.4 228 72.4
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 2.9e-94 349.4 235 70.6
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 2.9e-94 349.4 228 72.8
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 2.9e-94 349.4 231 72.3
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 3.8e-94 349.0 252 66.3
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 3.8e-94 349.0 295 62.4
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 4.9e-94 348.6 277 63.9
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 4.9e-94 348.6 228 72.4
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 4.9e-94 348.6 291 59.1
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.4e-93 347.1 252 65.1
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.2e-93 345.5 291 59.8
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 4.2e-93 345.5 208 76.9
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 7.1e-93 344.7 213 75.6
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 7.1e-93 344.7 215 74.9
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 1.6e-92 343.6 228 69.3
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 2.7e-92 342.8 255 67.8
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 2.7e-92 342.8 193 78.8
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 3.5e-92 342.4 259 66.8
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 3.5e-92 342.4 296 60.8
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 4.6e-92 342.0 266 63.2
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.3e-91 340.5 304 60.5
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 1.8e-91 340.1 214 75.2
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 2.3e-91 339.7 222 73.0
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 3.0e-91 339.3 294 58.5
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 3.9e-91 339.0 226 73.0
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 6.7e-91 338.2 225 70.7
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 4.3e-90 335.5 318 54.4
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 5.6e-90 335.1 262 61.8
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 1.3e-89 334.0 257 63.4
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 2.1e-89 333.2 257 63.4
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 2.1e-89 333.2 257 63.4
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 2.1e-89 333.2 295 58.3
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-88 330.5 360 50.8
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.1e-88 329.3 213 73.7
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.1e-85 320.9 338 50.0
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.0e-84 315.1 287 60.3
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.4e-80 303.9 185 77.8
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.8e-80 303.5 401 44.4
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.0e-78 297.7 264 60.2
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 7.2e-77 291.6 205 70.7
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 3.0e-75 286.2 335 49.9
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 8.8e-75 284.6 260 58.8
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-72 277.3 229 60.3
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 4.1e-72 275.8 191 69.1
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 4.5e-71 272.3 289 49.8
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 5.5e-69 265.4 325 48.6
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.7e-68 262.3 246 56.9
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 2.5e-61 240.0 125 79.2
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.2e-61 239.2 215 58.1
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.5e-61 238.8 167 67.1
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.2e-59 232.3 255 51.0
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 2.6e-58 229.9 162 63.0
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 1.7e-57 227.3 194 58.2
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 2.4e-56 223.4 124 75.0
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.9e-53 213.8 122 78.7
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 5.5e-53 212.2 180 60.6
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.2e-53 211.8 138 71.7
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.2e-47 194.5 138 67.4
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 4.0e-43 179.5 126 58.7
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 2.0e-42 177.2 275 40.7
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.6e-36 157.5 100 72.0
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 4.7e-36 156.0 197 41.1
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 7.8e-31 138.7 93 71.0
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.1e-27 126.7 133 52.6
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 2.3e-19 100.5 151 45.7
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.2e-15 88.2 120 48.3
Eucgr.H04277 Eucalyptus grandis HOM05D005134 ORTHO05D194288 1.7e-09 67.8 165 35.2
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 1.1e-08 65.1 72 51.4
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.1e-08 65.1 32 84.4
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 1.9e-08 64.3 79 50.6
Sabra19G0029700 Salix brachista HOM05D010192 ORTHO05D012386 5.1e-06 56.2 28 89.3


User provided reference genes

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