Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 9.4e-56 219.9 109 100.0
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 3.1e-19 98.6 103 54.4
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 1.0e-17 93.6 103 50.5
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 2.3e-17 92.4 108 51.9
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 6.6e-17 90.9 110 51.8
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 1.1e-16 90.1 103 52.4
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.1e-16 90.1 109 49.5
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 2.5e-16 89.0 111 50.5
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 3.3e-16 88.6 109 45.9
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 4.3e-16 88.2 109 46.8
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 7.3e-16 87.4 68 67.6
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 9.5e-16 87.0 104 51.0
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 9.5e-16 87.0 109 47.7
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 9.5e-16 87.0 109 49.5
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 1.2e-15 86.7 109 47.7
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 1.6e-15 86.3 109 49.5
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 3.6e-15 85.1 109 46.8
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 4.7e-15 84.7 103 48.5
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 6.1e-15 84.3 75 58.7
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 6.1e-15 84.3 108 49.1
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 8.0e-15 84.0 106 50.9
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 1.0e-14 83.6 101 49.5
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.0e-14 83.6 108 50.9
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 1.4e-14 83.2 103 44.7
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 1.4e-14 83.2 104 49.0
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 1.8e-14 82.8 101 51.5
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 1.8e-14 82.8 110 46.4
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 3.0e-14 82.0 104 49.0
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 4.0e-14 81.6 108 49.1
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.0e-14 81.6 108 49.1
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 5.2e-14 81.3 108 45.4
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 6.8e-14 80.9 105 44.8
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 1.2e-13 80.1 105 48.6
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 1.2e-13 80.1 115 47.0
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 2.0e-13 79.3 102 49.0
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 3.4e-13 78.6 117 42.7
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 4.4e-13 78.2 109 44.0
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 7.5e-13 77.4 103 44.7
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 7.5e-13 77.4 62 62.9
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 1.3e-12 76.6 104 44.2
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.3e-12 76.6 110 47.3
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 3.7e-12 75.1 102 48.0
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 6.4e-12 74.3 102 52.0
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 8.3e-12 73.9 61 59.0
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.1e-11 73.6 61 59.0
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 1.1e-11 73.6 61 59.0
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 1.1e-11 73.6 115 42.6
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 1.4e-11 73.2 106 46.2
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 1.9e-11 72.8 108 46.3
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 2.4e-11 72.4 70 55.7
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 3.2e-11 72.0 103 43.7
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 3.2e-11 72.0 109 42.2
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 4.1e-11 71.6 101 41.6
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 4.1e-11 71.6 113 44.2
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 5.4e-11 71.2 59 62.7
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 7.0e-11 70.9 104 41.3
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 7.0e-11 70.9 101 45.5
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 3.5e-10 68.6 105 43.8
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 6.0e-10 67.8 101 44.6
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 1.0e-09 67.0 101 42.6
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 3.0e-09 65.5 59 57.6
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 3.9e-09 65.1 55 60.0
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 1.9e-08 62.8 47 66.0
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 2.5e-08 62.4 54 61.1
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 3.3e-08 62.0 58 56.9
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 7.3e-08 60.8 102 41.2
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 9.5e-08 60.5 101 39.6
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 9.5e-08 60.5 89 41.6
TPR.G6325 Trifolium pratense HOM05D009255 ORTHO05D011239 1.2e-07 60.1 69 43.5
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 3.6e-07 58.5 57 56.1
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 3.6e-07 58.5 57 56.1
Phvul.009G134100 Phaseolus vulgaris HOM05D009255 ORTHO05D011239 6.2e-07 57.8 77 41.6
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 8.0e-07 57.4 64 48.4
VMungo1309G1730 Vigna mungo HOM05D009255 ORTHO05D011239 1.1e-06 57.0 77 40.3
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 1.4e-06 56.6 47 59.6
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 1.4e-06 56.6 107 35.5
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 1.4e-06 56.6 104 39.4
Psat5g082600 Pisum sativum HOM05D009255 ORTHO05D011239 1.8e-06 56.2 56 50.0
BcaNung05339 Brassica carinata HOM05D000119 ORTHO05D000054 3.1e-06 55.5 64 48.4
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 4.0e-06 55.1 105 37.1
BcaNung02175 Brassica carinata HOM05D010996 ORTHO05D009840 5.2e-06 54.7 51 56.9
BolC7t46412H Brassica oleracea HOM05D010996 ORTHO05D009840 5.2e-06 54.7 51 56.9
Lj1g0001909 Lotus japonicus HOM05D009255 ORTHO05D011239 5.2e-06 54.7 81 40.7
Glyma.04G241800 Glycine max HOM05D009255 ORTHO05D011239 8.9e-06 53.9 79 38.0


User provided reference genes

Program Settings