Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 3.3e-164 581.6 296 100.0
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 2.6e-60 236.5 311 47.3
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.0e-56 224.6 308 47.4
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.8e-56 223.8 306 47.4
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-55 221.1 306 47.7
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.5e-55 219.9 313 43.5
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 7.4e-55 218.4 324 44.4
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 9.7e-55 218.0 300 46.7
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 2.4e-53 213.4 316 44.6
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 2.4e-53 213.4 306 44.1
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 4.1e-53 212.6 305 44.9
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 5.3e-53 212.2 310 43.9
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 5.3e-53 212.2 310 44.5
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.2e-52 211.1 305 45.2
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 7.7e-52 208.4 327 45.0
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 8.5e-51 204.9 317 42.0
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 2.5e-50 203.4 285 47.4
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.5e-50 203.4 296 43.2
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 7.2e-50 201.8 306 43.1
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 9.4e-50 201.4 296 42.9
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 3.6e-49 199.5 309 42.4
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 1.4e-48 197.6 310 41.6
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 3.9e-48 196.1 308 42.2
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 6.7e-48 195.3 329 41.9
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 8.8e-48 194.9 307 43.0
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 8.8e-48 194.9 295 42.0
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.1e-47 194.5 310 42.6
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 2.0e-47 193.7 308 39.6
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 4.4e-47 192.6 316 42.1
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 7.4e-47 191.8 317 41.3
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 9.7e-47 191.4 295 40.3
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 3.7e-46 189.5 284 43.3
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 8.2e-46 188.3 286 42.0
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 3.1e-45 186.4 305 40.7
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 4.1e-45 186.0 301 41.2
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 5.3e-45 185.7 272 43.4
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 5.3e-45 185.7 303 39.9
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 9.1e-45 184.9 316 39.2
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.6e-44 183.3 300 39.7
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 4.5e-44 182.6 290 43.1
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 5.9e-44 182.2 313 41.5
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.0e-43 181.4 296 39.9
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 2.2e-43 180.3 301 41.9
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 2.9e-43 179.9 327 38.8
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 2.9e-43 179.9 291 41.2
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 2.9e-43 179.9 308 41.6
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 5.0e-43 179.1 278 41.0
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 5.0e-43 179.1 291 40.5
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 5.0e-43 179.1 299 38.8
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 6.5e-43 178.7 298 40.9
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 6.5e-43 178.7 316 37.7
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 8.5e-43 178.3 308 38.3
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.1e-42 177.9 291 38.8
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.4e-42 177.6 293 38.6
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.9e-42 177.2 301 39.5
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 2.5e-42 176.8 293 38.9
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 3.2e-42 176.4 304 40.1
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.2e-42 176.0 287 40.8
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 5.5e-42 175.6 326 38.3
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 7.2e-42 175.3 288 38.9
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 1.2e-41 174.5 306 40.2
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 1.2e-41 174.5 308 40.6
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.2e-41 174.5 309 41.1
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 2.1e-41 173.7 298 39.6
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 6.1e-41 172.2 291 38.1
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 6.1e-41 172.2 304 39.1
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.8e-40 170.6 302 38.7
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.8e-40 170.6 289 41.5
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 2.3e-40 170.2 307 37.5
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 3.9e-40 169.5 285 38.2
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 3.9e-40 169.5 289 36.7
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 5.2e-40 169.1 289 37.7
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 6.7e-40 168.7 298 39.6
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 2.6e-39 166.8 273 41.4
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.7e-38 164.1 298 38.6
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 3.7e-38 162.9 323 35.9
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 6.3e-38 162.2 292 37.7
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.4e-37 161.0 330 37.0
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.8e-37 160.6 377 36.1
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 4.1e-37 159.5 289 36.0
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 9.1e-37 158.3 313 38.0
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 1.2e-36 157.9 292 37.0
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 2.6e-36 156.8 290 36.2
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 2.6e-36 156.8 290 36.2
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.5e-36 156.4 312 34.6
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 3.5e-36 156.4 330 37.9
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 5.9e-36 155.6 290 35.9
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.2e-35 153.7 293 37.9
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 2.9e-35 153.3 298 36.2
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 3.8e-35 152.9 313 34.8
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.8e-35 152.9 313 34.8
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 8.5e-35 151.8 349 35.0
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 3.2e-34 149.8 302 37.7
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 7.2e-34 148.7 307 35.2
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 7.2e-34 148.7 294 36.1
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 2.7e-33 146.7 288 35.8
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.0e-32 144.8 318 33.6
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 4.0e-32 142.9 313 33.9
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 6.7e-32 142.1 364 33.8
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.2e-31 141.4 229 40.6
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.7e-30 137.5 293 33.4
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 2.2e-30 137.1 343 33.8
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.4e-29 134.4 312 31.4
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.4e-29 134.4 285 36.1
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.4e-29 134.4 331 34.7
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 7.0e-29 132.1 314 32.2
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 9.1e-29 131.7 218 41.3
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 2.7e-28 130.2 323 32.5
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 5.0e-27 125.9 300 34.0
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 5.5e-26 122.5 287 33.1
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 2.3e-24 117.1 296 34.1
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 5.7e-23 112.5 215 39.1
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 5.4e-21 105.9 217 38.7
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.2e-20 104.8 404 29.2
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 7.7e-20 102.1 95 52.6
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 1.0e-19 101.7 96 52.1
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 3.8e-19 99.8 250 32.8
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 8.6e-19 98.6 277 26.7
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.5e-18 97.8 355 28.2
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 2.1e-17 94.0 228 34.6
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 2.8e-17 93.6 310 29.0
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 8.0e-17 92.0 158 32.9
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 1.4e-16 91.3 201 32.8
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 3.4e-15 86.7 89 48.3
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 7.5e-15 85.5 244 33.2
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 1.3e-14 84.7 195 36.9
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.4e-13 81.3 203 30.5
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 5.4e-13 79.3 337 24.9
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.0e-12 77.4 194 33.5
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.9e-12 75.9 209 32.1
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 7.8e-12 75.5 92 45.7
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.5e-10 70.5 51 62.7
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.6e-09 67.8 147 33.3
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 6.1e-09 65.9 224 27.7
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 8.0e-09 65.5 70 48.6
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 1.8e-08 64.3 319 24.5
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 4.0e-08 63.2 125 33.6
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 7.5e-07 58.9 247 26.3
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 9.8e-07 58.5 115 33.0
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 2.2e-06 57.4 101 35.6


User provided reference genes

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