Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 0.0e+00 1266.1 714 100.0
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 4.0e-240 835.1 716 70.4
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 6.9e-232 807.7 715 68.1
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 2.5e-221 772.7 715 66.6
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.1e-220 769.6 747 65.2
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 3.0e-219 765.8 715 66.6
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 5.1e-219 765.0 715 65.2
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 2.5e-218 762.7 719 65.5
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 4.3e-218 761.9 705 66.0
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 2.2e-217 759.6 717 65.4
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.1e-216 757.3 716 65.6
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.4e-215 752.3 723 64.2
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 7.7e-215 751.1 714 64.3
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 8.5e-214 747.7 760 61.6
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.9e-213 746.5 716 64.9
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 4.6e-212 741.9 726 62.8
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.0e-211 740.7 717 63.6
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.4e-211 740.3 721 63.8
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.9e-211 738.8 716 64.4
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 2.5e-210 736.1 716 64.2
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 2.8e-209 732.6 716 63.3
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 3.7e-209 732.3 705 64.3
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 6.9e-208 728.0 717 63.9
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.2e-207 727.2 716 64.2
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 3.4e-207 725.7 717 62.9
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.2e-205 718.8 733 62.3
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.4e-205 717.6 721 62.0
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 7.9e-204 714.5 717 62.3
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 3.9e-203 712.2 717 62.6
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.0e-202 709.9 718 61.8
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.4e-202 708.0 716 61.7
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 6.3e-201 704.9 721 61.7
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.1e-200 704.1 716 62.3
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.6e-199 699.5 554 73.8
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 2.6e-199 699.5 733 61.7
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 4.5e-199 698.7 733 61.7
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-197 694.1 716 61.0
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 9.4e-197 691.0 718 60.2
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 3.0e-195 686.0 719 60.1
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 1.1e-194 684.1 719 61.3
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 1.5e-194 683.7 578 70.6
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.5e-194 683.7 778 58.1
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 7.4e-194 681.4 742 58.5
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 9.7e-194 681.0 720 61.0
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 4.8e-193 678.7 715 60.4
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.1e-192 677.6 714 61.2
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 7.0e-192 674.9 720 59.2
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 1.7e-190 670.2 719 62.9
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 8.5e-190 667.9 709 60.2
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.5e-189 667.2 730 59.0
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.2e-186 657.5 722 57.8
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.0e-186 656.8 715 58.5
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 4.4e-186 655.6 660 63.6
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 6.3e-185 651.7 729 58.3
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 9.1e-184 647.9 723 58.4
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 2.9e-182 642.9 727 57.9
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 5.0e-182 642.1 722 57.9
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 8.5e-182 641.3 715 59.2
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 2.1e-180 636.7 723 58.2
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 1.0e-179 634.4 729 55.7
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.4e-179 634.0 729 55.7
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.4e-179 634.0 726 56.7
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 2.3e-179 633.3 717 57.2
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 4.0e-179 632.5 740 55.1
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.2e-178 630.9 745 55.7
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.0e-178 630.2 736 56.7
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 2.0e-178 630.2 715 57.5
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 7.5e-178 628.2 748 57.6
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.7e-177 627.1 719 56.7
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 1.7e-177 627.1 729 55.4
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 2.7e-175 619.8 636 62.9
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 5.9e-175 618.6 732 54.8
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.1e-173 614.4 721 55.2
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 7.2e-173 611.7 715 56.2
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 3.4e-170 602.8 718 57.7
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.7e-169 600.5 735 55.0
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 4.1e-168 595.9 475 71.6
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 2.0e-167 593.6 729 53.4
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 4.5e-167 592.4 718 53.6
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 7.8e-167 591.7 746 55.0
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.3e-166 590.9 733 55.5
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.7e-166 590.5 731 54.4
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 3.9e-166 589.3 727 55.3
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 2.5e-165 586.6 719 55.5
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 9.5e-165 584.7 724 53.0
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 8.0e-164 581.6 713 55.8
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 6.8e-163 578.6 805 51.3
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.2e-162 577.8 671 59.0
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.8e-162 574.7 731 54.6
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 4.9e-161 572.4 730 53.7
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.9e-161 572.4 731 54.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 5.4e-160 568.9 718 52.9
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 7.0e-160 568.5 715 53.1
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 7.8e-159 565.1 765 52.4
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.3e-158 564.3 740 53.0
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 6.6e-158 562.0 715 53.4
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.2e-156 557.8 763 51.8
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 4.7e-156 555.8 722 52.9
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 4.4e-154 549.3 396 78.8
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 5.4e-152 542.3 769 50.8
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.0e-150 538.1 703 51.5
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.1e-149 534.6 736 49.9
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 4.3e-149 532.7 449 73.1
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.1e-147 528.1 723 49.0
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.0e-147 526.2 740 50.8
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 7.8e-143 511.9 731 49.8
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 1.1e-141 508.1 633 54.2
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.1e-139 500.0 498 64.5
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.6e-138 496.9 498 64.3
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.2e-137 493.8 731 49.4
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.1e-120 438.3 540 55.2
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.9e-104 384.4 737 41.1
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 4.8e-92 343.2 240 82.5
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.9e-91 339.3 228 81.6
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.6e-90 337.4 211 87.2
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.6e-90 337.4 211 87.2
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.3e-84 316.2 432 51.6
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.8e-81 307.0 231 73.6
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 4.2e-80 303.5 432 51.6
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 5.5e-80 303.1 231 75.3
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.5e-72 278.5 186 80.6
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.5e-72 278.5 497 41.9
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 2.9e-65 254.2 384 47.1
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.1e-64 252.3 172 79.7
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 9.4e-64 249.2 476 39.5
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 1.2e-53 215.7 136 83.8
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-48 198.7 442 39.1
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 1.2e-47 195.7 411 39.4
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 9.8e-45 186.0 208 62.0
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 8.3e-44 183.0 497 34.0
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.3e-36 159.1 324 42.6
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 7.3e-32 143.3 243 42.0
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 3.4e-29 134.4 86 84.9
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 1.3e-28 132.5 212 46.2
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 2.4e-27 128.3 94 71.3
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 3.3e-24 117.9 198 47.5
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-22 111.7 70 84.3
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-22 111.7 70 84.3
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-22 111.7 70 84.3
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.9e-22 109.8 72 80.6
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 1.9e-19 102.1 297 33.3
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-19 101.7 70 81.4
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 2.7e-18 98.2 454 28.0
Ah.14g083310 Amaranthus hybridus HOM05D004485 ORTHO05D005485 7.6e-13 80.1 230 36.5
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 8.4e-12 76.6 75 61.3
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.1e-11 76.3 65 63.1
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 9.3e-11 73.2 464 26.5
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 5.6e-08 63.9 49 77.6
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.6e-07 62.4 336 25.9
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.1e-07 62.0 333 25.5
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 4.8e-07 60.8 311 27.3
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 6.2e-07 60.5 153 37.9
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 8.1e-07 60.1 330 25.5
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 6.9e-06 57.0 33 93.9


User provided reference genes

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