Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 6.8e-139 497.3 245 100.0
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 4.3e-117 424.9 223 91.9
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 5.6e-117 424.5 226 92.0
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 6.2e-116 421.0 223 90.1
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 6.2e-116 421.0 223 90.1
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.4e-115 419.9 223 90.1
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.4e-115 419.1 232 87.5
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 9.0e-115 417.2 230 87.0
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 5.8e-114 414.5 224 88.8
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 9.9e-114 413.7 232 86.6
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.3e-113 413.3 223 88.8
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.7e-113 412.9 230 86.1
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.7e-113 412.9 224 88.4
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.2e-113 412.5 223 90.1
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.2e-113 412.5 223 90.1
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 2.9e-113 412.1 226 87.6
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 2.9e-113 412.1 224 89.7
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 3.8e-113 411.8 226 87.2
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 4.9e-113 411.4 224 88.4
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 6.4e-113 411.0 225 88.9
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 8.4e-113 410.6 224 88.8
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 8.4e-113 410.6 223 89.7
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.1e-112 410.2 224 89.3
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.9e-112 409.5 229 87.3
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.9e-112 409.5 228 86.8
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.4e-112 409.1 223 88.8
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 4.2e-112 408.3 225 87.1
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 4.2e-112 408.3 224 87.5
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 7.1e-112 407.5 226 88.1
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 7.1e-112 407.5 224 87.1
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 9.3e-112 407.1 223 87.9
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.2e-111 406.8 223 89.2
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.7e-111 405.6 224 87.5
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 2.7e-111 405.6 225 88.4
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 3.5e-111 405.2 222 87.8
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 3.5e-111 405.2 223 87.0
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 6.0e-111 404.4 226 88.1
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 7.9e-111 404.1 225 85.8
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 7.9e-111 404.1 223 87.9
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.0e-110 403.7 223 87.0
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 8.7e-110 400.6 222 85.6
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 8.7e-110 400.6 222 85.6
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.1e-109 400.2 225 85.8
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.1e-109 400.2 224 86.6
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.5e-109 399.8 224 84.8
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 7.4e-109 397.5 225 87.6
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 9.6e-109 397.1 235 83.4
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 9.6e-109 397.1 223 86.1
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.3e-108 396.7 226 85.8
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.6e-108 396.4 239 83.3
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.1e-108 396.0 224 86.6
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 2.1e-108 396.0 225 86.2
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.8e-108 395.6 229 84.3
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 3.7e-108 395.2 223 87.4
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.7e-108 395.2 224 85.3
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 4.8e-108 394.8 231 84.0
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 4.8e-108 394.8 223 86.5
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 4.8e-108 394.8 227 86.3
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 8.1e-108 394.0 225 87.1
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.1e-107 393.7 223 87.0
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.1e-107 393.7 223 87.0
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.4e-107 393.3 234 82.5
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 2.4e-107 392.5 225 84.4
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 2.4e-107 392.5 225 84.4
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.4e-107 392.5 223 86.5
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.4e-107 392.5 223 86.5
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 3.1e-107 392.1 223 87.9
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 4.0e-107 391.7 243 80.7
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 4.0e-107 391.7 243 80.7
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 4.0e-107 391.7 225 85.3
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 5.3e-107 391.3 227 85.0
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 6.9e-107 391.0 224 86.6
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 9.0e-107 390.6 232 85.3
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.2e-106 390.2 222 86.0
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 3.4e-106 388.7 265 74.3
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 3.4e-106 388.7 226 83.6
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.0e-105 387.1 218 87.6
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 2.9e-105 385.6 226 83.2
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 3.8e-105 385.2 232 81.9
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 4.9e-105 384.8 257 75.9
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 4.9e-105 384.8 233 83.7
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 4.9e-105 384.8 221 86.4
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 8.4e-105 384.0 222 85.6
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.1e-104 383.6 220 86.4
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.4e-104 383.3 234 80.3
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.9e-104 382.9 233 80.3
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 4.2e-104 381.7 222 83.8
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 7.1e-104 380.9 210 87.6
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.2e-103 380.2 246 79.7
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.6e-103 379.8 253 75.9
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 3.5e-103 378.6 224 82.6
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.5e-103 378.6 196 92.9
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 4.6e-103 378.3 216 84.7
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 4.6e-103 378.3 196 91.3
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.8e-102 376.3 217 83.4
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 5.1e-102 374.8 219 83.6
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 6.7e-102 374.4 196 91.3
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 4.8e-100 368.2 210 86.2
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.2e-98 363.6 254 73.2
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 5.9e-98 361.3 207 84.5
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 3.2e-96 355.5 203 84.2
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-94 349.4 209 82.8
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-94 349.4 209 82.8
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.1e-93 347.1 223 79.4
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 3.1e-91 339.0 225 76.4
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 6.9e-91 337.8 222 78.4
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.2e-90 337.0 251 71.3
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.2e-90 337.0 251 71.3
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 4.2e-88 328.6 193 83.9
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.9e-86 322.0 191 84.8
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 1.8e-83 313.2 220 74.5
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.5e-82 310.1 237 69.6
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 7.7e-82 307.8 147 97.3
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.3e-81 307.0 403 46.7
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 2.9e-73 279.3 189 67.7
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 2.1e-71 273.1 161 83.9
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.3e-68 261.5 221 65.6
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.4e-67 260.4 225 61.3
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 3.1e-67 259.2 180 71.7
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 2.9e-65 252.7 206 66.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.5e-64 250.4 217 56.2
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.5e-64 250.4 171 73.7
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 5.7e-61 238.4 206 61.7
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 2.2e-60 236.5 141 84.4
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.0e-58 229.9 224 52.7
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 6.8e-54 214.9 116 86.2
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.8e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.1e-39 166.8 91 89.0
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 5.4e-27 125.6 96 66.7
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 3.1e-22 109.8 55 92.7
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.9e-19 100.5 45 100.0
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 9.2e-19 98.2 201 29.4
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 7.8e-18 95.1 281 29.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.1e-15 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 3.4e-13 79.7 39 92.3
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 6.4e-12 75.5 61 63.9
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 6.4e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 6.4e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.1e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 2.7e-10 70.1 30 96.7


User provided reference genes

Program Settings