Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 2954.5 1495 100.0
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1723.4 1486 60.0
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1661.7 1511 58.2
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1658.3 1487 57.9
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1648.3 1548 57.2
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1636.7 1512 58.2
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1625.1 1514 56.2
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1622.8 1523 56.7
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1616.3 1520 56.1
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1609.0 1493 57.1
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1604.0 1516 55.8
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1600.9 1511 56.5
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1594.3 1524 56.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1578.1 1509 55.3
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1573.9 1518 55.1
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1567.4 1512 55.3
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1566.2 1527 54.7
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1560.0 1553 54.5
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1557.7 1519 55.5
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1551.6 1529 54.3
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1542.7 1470 56.1
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1535.4 1510 54.4
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1532.3 1511 54.5
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1528.5 1533 54.1
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1525.4 1510 54.2
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1514.2 1622 51.3
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1511.9 1483 54.3
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1511.1 1488 55.0
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1492.6 1560 52.2
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1488.8 1614 51.4
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1476.5 1552 52.7
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1475.3 1529 52.4
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1469.9 1522 52.4
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1464.5 1524 52.5
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1447.2 1523 52.4
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1444.9 1412 54.2
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1440.6 1529 51.1
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1432.9 1524 51.7
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1430.2 1526 52.2
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1428.3 1519 52.1
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1426.8 1517 51.8
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1425.2 1512 51.3
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1425.2 1523 51.4
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1422.9 1522 52.1
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1420.2 1521 52.2
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1419.4 1518 51.7
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1419.4 1523 50.0
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1417.9 1522 50.0
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1411.4 1556 50.8
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1411.4 1525 51.6
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1405.6 1514 50.9
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1399.0 1534 50.7
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1399.0 1535 51.0
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1399.0 1506 50.9
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1394.4 1516 50.0
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1392.5 1529 49.4
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1390.9 1567 49.6
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1384.0 1524 49.3
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1383.2 1506 50.1
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1382.5 1520 50.3
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1379.8 1533 50.4
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1378.2 1562 49.0
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1376.7 1502 50.9
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1372.8 1512 49.5
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1367.8 1541 49.1
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1355.5 1516 50.7
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1350.9 1498 49.7
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1349.7 1500 49.5
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1349.7 1500 49.5
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1348.6 1517 49.2
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1343.2 1497 49.6
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1342.0 1529 48.5
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1340.9 1501 49.7
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1339.7 1517 49.0
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1338.6 1517 49.2
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1338.6 1519 48.9
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1325.5 1488 49.6
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1322.0 1535 48.6
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1315.8 1570 48.0
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1314.3 1534 48.9
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1311.6 1512 48.7
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1310.8 1335 53.8
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1290.4 1518 47.8
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1277.7 1524 47.4
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1208.4 1407 48.1
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1205.7 1350 50.7
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1203.0 1586 44.9
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1151.3 1361 47.9
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1137.1 1554 42.7
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1121.7 1313 48.8
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1105.1 1529 43.4
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1103.2 1443 45.1
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 1.3e-296 1023.8 1543 40.7
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 2.9e-296 1022.7 1125 50.4
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 3.5e-278 962.6 1086 50.1
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 2.9e-248 863.2 989 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 5.1e-229 799.3 1632 33.9
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 5.9e-185 652.9 482 70.5
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.7e-179 634.8 483 68.1
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 4.6e-177 626.7 907 41.5
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 1.3e-160 572.0 1506 29.9
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.3e-133 480.3 1045 31.4
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.3e-110 406.0 693 36.7
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 2.5e-82 312.0 411 44.5
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.0e-75 290.0 626 31.0
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 2.2e-54 219.2 186 58.6
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 2.4e-45 189.1 163 60.1
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 7.8e-36 157.5 107 67.3
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 2.4e-29 136.0 93 64.5
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 8.7e-27 127.5 89 66.3
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 9.6e-26 124.0 89 59.6
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 1.8e-24 119.8 101 59.4
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.1e-21 110.5 81 72.8
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 9.3e-21 107.5 86 60.5
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 9.3e-21 107.5 86 60.5
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.0e-14 87.4 67 68.7
MCO04G335 Micromonas commoda HOM05D006693 ORTHO05D008092 6.5e-06 58.2 119 33.6


User provided reference genes

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