Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.5e-61 237.3 124 100.0
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.4e-60 236.1 124 99.2
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 3.0e-50 201.8 121 83.5
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 8.7e-50 200.3 122 82.0
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 8.7e-50 200.3 120 81.7
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 2.5e-49 198.7 122 78.7
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 3.3e-49 198.4 122 79.5
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 4.3e-49 198.0 122 78.7
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 5.7e-49 197.6 120 81.7
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 5.7e-49 197.6 120 81.7
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 7.4e-49 197.2 120 81.7
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 9.7e-49 196.8 118 82.2
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 9.7e-49 196.8 118 82.2
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 9.7e-49 196.8 120 80.8
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.3e-48 196.4 122 79.5
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 1.6e-48 196.1 120 80.0
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 2.2e-48 195.7 117 83.8
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 2.2e-48 195.7 120 80.0
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.7e-48 194.9 120 80.0
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.7e-48 194.9 122 78.7
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 4.8e-48 194.5 122 77.0
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 6.3e-48 194.1 120 79.2
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 6.3e-48 194.1 120 78.3
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.1e-47 193.4 120 79.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.1e-47 193.4 120 77.5
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.1e-47 193.4 122 76.2
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.4e-47 193.0 120 79.2
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.4e-47 193.0 119 78.2
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.8e-47 192.6 117 79.5
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.8e-47 192.6 120 78.3
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.8e-47 192.6 120 78.3
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 3.1e-47 191.8 119 80.7
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 3.1e-47 191.8 120 79.2
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 3.1e-47 191.8 120 78.3
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 4.1e-47 191.4 120 79.2
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 4.1e-47 191.4 120 78.3
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.1e-47 191.4 122 77.9
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 5.3e-47 191.0 122 74.6
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 5.3e-47 191.0 120 75.8
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 6.9e-47 190.7 120 76.7
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.9e-47 190.7 122 75.4
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 9.0e-47 190.3 119 78.2
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 9.0e-47 190.3 119 78.2
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 9.0e-47 190.3 119 78.2
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 9.0e-47 190.3 120 78.3
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 9.0e-47 190.3 117 80.3
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.2e-46 189.9 122 77.9
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.2e-46 189.9 119 78.2
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.2e-46 189.9 119 78.2
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.0e-46 189.1 122 75.4
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.6e-46 188.7 130 73.1
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.6e-46 188.7 120 75.8
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.6e-46 188.7 122 73.8
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.6e-46 188.7 117 79.5
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 2.6e-46 188.7 117 79.5
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 3.4e-46 188.3 122 75.4
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 5.9e-46 187.6 120 77.5
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 5.9e-46 187.6 120 75.0
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 7.7e-46 187.2 119 76.5
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.7e-46 187.2 122 73.8
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.7e-46 187.2 120 77.5
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 7.7e-46 187.2 120 75.0
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.0e-45 186.8 128 75.0
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.3e-45 186.4 120 76.7
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 2.2e-45 185.7 120 74.2
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.2e-45 185.7 122 74.6
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 2.9e-45 185.3 129 72.9
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 2.9e-45 185.3 117 78.6
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.9e-45 185.3 124 76.6
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.8e-45 184.9 122 73.0
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 3.8e-45 184.9 122 71.3
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.8e-45 184.9 122 76.2
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 6.5e-45 184.1 120 72.5
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 8.5e-45 183.7 116 76.7
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 8.5e-45 183.7 117 76.1
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.4e-44 183.0 117 76.9
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 7.2e-44 180.6 122 73.0
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 9.4e-44 180.3 120 74.2
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 9.4e-44 180.3 124 75.0
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 9.4e-44 180.3 120 74.2
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.6e-43 179.5 117 73.5
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.6e-43 179.5 117 73.5
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.6e-43 179.5 122 73.8
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 2.1e-43 179.1 120 73.3
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.7e-43 178.7 117 75.2
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.6e-43 178.3 117 74.4
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.6e-43 177.9 105 84.8
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 6.1e-43 177.6 120 74.2
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 7.9e-43 177.2 117 74.4
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 7.9e-43 177.2 108 82.4
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.4e-42 176.4 104 81.7
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.4e-42 176.4 110 78.2
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.4e-42 176.4 122 73.8
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.4e-42 176.4 120 71.7
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.3e-42 175.6 120 70.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 3.0e-42 175.3 117 71.8
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 5.1e-42 174.5 110 76.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 8.8e-42 173.7 117 71.8
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.4e-41 170.6 124 69.4
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 9.7e-41 170.2 117 70.9
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.3e-40 169.9 119 69.7
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 5.3e-39 164.5 121 72.7
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 6.9e-39 164.1 117 70.1
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 6.9e-39 164.1 120 69.2
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.4e-38 161.8 110 73.6
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 3.4e-38 161.8 117 70.1
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.0e-37 160.2 98 83.7
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.3e-37 159.8 119 72.3
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.3e-37 159.8 122 63.1
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.5e-37 157.5 99 80.8
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 8.5e-37 157.1 93 81.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 2.5e-36 155.6 118 66.1
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 4.2e-36 154.8 98 79.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 5.5e-36 154.5 102 72.5
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 7.9e-35 150.6 98 75.5
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 2.3e-34 149.1 120 64.2
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 3.0e-34 148.7 98 77.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 3.0e-34 148.7 98 77.6
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 3.0e-34 148.7 95 78.9
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 8.8e-34 147.1 120 63.3
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.3e-33 145.2 107 67.3
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.3e-32 143.3 120 64.2
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.7e-32 141.7 86 83.7
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 4.8e-32 141.4 123 61.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.4e-31 139.0 122 59.8
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 3.1e-31 138.7 120 60.8
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 7.7e-30 134.0 105 62.9
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 7.7e-30 134.0 96 68.8
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 1.0e-29 133.7 108 64.8
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.8e-29 131.7 83 74.7
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 8.5e-29 130.6 82 74.4
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 9.4e-28 127.1 80 70.0
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.6e-27 125.2 95 68.4
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 4.7e-27 124.8 116 51.7
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 8.0e-27 124.0 112 57.1
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 4.0e-26 121.7 113 52.2
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 4.0e-26 121.7 115 51.3
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 6.7e-26 120.9 120 48.3
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 8.8e-26 120.6 120 53.3
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.1e-25 120.2 88 62.5
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.6e-25 119.0 120 55.0
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 4.4e-25 118.2 122 52.5
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 4.4e-25 118.2 114 57.9
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.3e-24 116.7 115 49.6
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.7e-24 116.3 113 55.8
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-24 116.3 85 68.2
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 1.7e-24 116.3 116 54.3
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 6.3e-24 114.4 124 50.8
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.1e-23 113.6 102 54.9
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 2.4e-23 112.5 124 48.4
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 5.0e-21 104.8 125 46.4
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 7.2e-20 100.9 76 71.1
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 1.2e-17 93.6 61 75.4
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.3e-16 90.1 56 71.4
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.7e-08 63.2 40 75.0
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 4.9e-08 61.6 75 46.7
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.8e-07 59.7 53 47.2
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.8e-07 59.7 111 35.1
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 3.1e-07 58.9 111 35.1
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 4.1e-07 58.5 111 34.2
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 1.6e-06 56.6 111 33.3
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 1.6e-06 56.6 111 32.4
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 2.0e-06 56.2 111 33.3
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 2.0e-06 56.2 111 33.3
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 2.7e-06 55.8 111 32.4
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 3.5e-06 55.5 111 31.5
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 3.5e-06 55.5 111 31.5
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 4.5e-06 55.1 111 32.4
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 4.5e-06 55.1 111 32.4
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 4.5e-06 55.1 111 32.4
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 7.7e-06 54.3 111 31.5
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 7.7e-06 54.3 111 31.5


User provided reference genes

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