Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 8033.3 3941 100.0
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 5883.5 3941 72.6
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 5794.5 3939 71.2
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 5779.1 3939 71.1
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 5768.7 3943 71.0
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 5354.3 3954 66.0
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 5341.5 3962 65.7
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 5283.4 3960 64.9
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 5267.2 3970 65.1
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 5264.1 3962 64.8
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 5251.0 3957 65.2
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 5247.9 3957 64.9
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 5247.6 3959 64.5
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 5247.2 3971 64.5
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 5243.3 3980 64.3
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 5237.5 3976 64.8
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 5237.2 3958 64.4
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 5234.1 3955 64.5
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 5219.4 3971 64.4
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 5181.3 3980 64.0
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 5177.1 3959 63.9
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 5174.8 3981 64.0
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 5174.0 3976 64.3
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 5124.3 3953 64.0
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 5121.6 3946 63.5
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 5115.4 4092 62.5
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 5114.3 3977 63.1
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 5034.5 3974 62.1
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 5011.0 3952 61.9
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 4989.1 4264 58.5
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 4978.7 3960 61.8
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 4973.7 3962 61.6
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 4966.7 3949 61.4
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 4962.9 3956 61.6
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 4961.0 3960 61.5
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 4958.7 3951 61.3
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 4953.3 4797 53.9
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 4948.3 3957 61.5
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 4942.1 3960 61.2
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 4935.2 3792 64.2
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 4918.2 3969 61.1
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 4916.7 3962 61.2
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 4910.1 3947 61.2
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 4908.6 3975 60.2
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 4897.8 3963 60.9
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 4878.2 3987 60.5
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 4851.6 3944 60.2
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 4833.9 3981 60.7
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 4825.8 3957 59.9
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 4805.4 3971 59.9
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 4797.3 3937 59.7
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 4792.6 3937 59.6
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 4788.0 3941 59.7
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 4783.0 3943 59.7
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 4773.4 3949 59.3
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 4769.9 3950 59.3
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 4766.1 3966 59.3
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 4763.0 3937 59.6
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 4755.7 3946 59.3
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 4742.2 3943 59.0
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 4738.3 3945 59.0
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 4713.7 3955 58.6
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 4710.6 3943 58.9
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 4430.6 3974 55.7
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 4402.0 3945 57.4
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 4278.4 3775 56.7
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 4256.1 3950 53.4
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 4239.1 3064 67.9
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 4120.5 3943 55.1
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 4107.8 3833 54.5
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 3992.2 3797 54.1
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 3929.4 2897 65.8
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 3741.0 2615 68.9
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 3580.8 3961 48.0
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 3480.3 4069 45.1
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 3412.9 4049 44.0
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 3379.7 4024 44.1
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 3367.8 2618 62.6
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 3308.1 2637 61.4
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 3100.1 2464 61.1
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 0.0e+00 2846.2 3984 39.7
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 2748.4 1959 67.1
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 0.0e+00 2599.3 1954 64.0
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 2562.7 2548 51.7
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 2533.4 1893 66.8
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 2465.3 2070 59.0
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 2386.3 1993 60.2
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 2380.9 2543 49.6
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 2269.2 1957 56.8
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 2268.4 1957 56.9
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 2191.8 1962 55.4
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 1746.9 1237 68.4
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 0.0e+00 1714.5 1358 62.7
Ca_30179_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 1629.0 1310 61.8
Dinv01184 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1582.4 1247 63.9
Gohir.A12G133900 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1521.9 1220 62.6
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 0.0e+00 1447.2 4563 28.0
Oeu055858.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 1409.0 1178 59.2
Peaxi162Scf00363g00321 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 1405.6 1162 61.0
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 0.0e+00 1323.5 1558 46.7
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 1319.3 1331 50.6
Solyc02g014180.2 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 1316.6 1109 60.1
Nitab4.5_0023098g0010 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 1256.1 1070 59.8
Cpa.g.sc0.152 Carica papaya HOM05D003919 ORTHO05D004906 0.0e+00 1224.2 1026 59.7
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 0.0e+00 1213.4 1093 57.7
CDE08G1346 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 1203.7 1325 47.2
Lj6P719T30 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1174.1 920 62.6
SEGI_31724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 1136.3 1195 48.4
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 5.8e-280 969.9 1344 42.6
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.6e-272 944.5 702 67.2
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 9.3e-270 936.0 720 61.1
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 8.1e-266 922.9 641 69.4
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 8.2e-234 816.6 849 51.2
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 9.4e-230 803.1 1329 38.3
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 1.2e-211 743.0 2925 25.3
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 8.3e-194 683.7 1777 30.6
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.9e-182 646.0 625 51.7
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 2.4e-177 629.0 588 52.7
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 3.2e-153 548.9 505 56.0
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 3.0e-143 515.8 333 76.9
HanXRQChr08g0218771 Helianthus annuus HOM05D003919 ORTHO05D004906 7.6e-139 501.1 475 54.5
ECA233G4021 Erigeron canadensis HOM05D003919 ORTHO05D004906 9.9e-139 500.7 562 48.8
ECA233G5658 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.2e-136 493.8 482 52.1
ECA233G3594 Erigeron canadensis HOM05D003919 ORTHO05D004906 2.4e-132 479.6 498 52.0
HanXRQChr08g0218781 Helianthus annuus HOM05D003919 ORTHO05D004906 5.0e-122 445.3 487 48.7
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 4.6e-120 438.7 364 58.0
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 3.6e-96 359.4 447 42.5
GSVIVG01028587001 Vitis vinifera HOM05D003919 ORTHO05D004906 4.8e-93 349.0 328 56.4
ECA233G0722 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-83 317.0 306 51.3
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 6.3e-77 295.4 199 66.8
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 2.9e-74 286.6 523 37.7
TAR374G1126 Trochodendron aralioides HOM05D003919 ORTHO05D036952 2.5e-73 283.5 302 49.0
Atru.chr11.1141 Acer truncatum HOM05D002456 ORTHO05D002994 5.6e-73 282.3 494 38.3
ECA233G5805 Erigeron canadensis HOM05D003919 ORTHO05D004906 2.1e-72 280.4 286 51.4
ECA233G4978 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.7e-72 279.3 293 50.2
Lj6A719G42 Lonicera japonica HOM05D003919 ORTHO05D004906 4.6e-67 262.7 175 71.4
Cpa.g.sc0.150 Carica papaya HOM05D003919 ORTHO05D004906 2.1e-64 253.8 175 70.9
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 8.9e-63 248.4 253 47.8
vmacro10894 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 1.2e-62 248.1 175 69.7
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 1.3e-61 244.6 246 45.9
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 1.7e-61 244.2 347 38.6
Peaxi162Scf00363g00327 Petunia axillaris HOM05D003919 ORTHO05D004906 1.2e-59 238.0 178 66.9
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 4.6e-59 236.1 241 46.9
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 1.0e-58 235.0 203 61.1
Nitab4.5_0003853g0030 Nicotiana tabacum HOM05D003919 ORTHO05D004906 2.5e-57 230.3 165 68.5
Nitab4.5_0000405g0050 Nicotiana tabacum HOM05D003919 ORTHO05D004906 4.3e-57 229.6 165 68.5
Solyc02g014170.3 Solanum lycopersicum HOM05D003919 ORTHO05D004906 1.1e-55 224.9 172 62.8
Cpa.g.sc0.154 Carica papaya HOM05D003919 ORTHO05D043505 2.9e-53 216.9 166 63.3
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.4e-52 213.8 136 68.4
Gohir.A12G134001 Gossypium hirsutum HOM05D003919 ORTHO05D004906 7.1e-52 212.2 164 61.6
SGA_v2.0_scaffold2647G54168 Striga asiatica HOM05D003919 ORTHO05D004906 1.0e-50 208.4 223 52.5
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 5.1e-50 206.1 230 45.7
SEGI_28603 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 9.5e-49 201.8 180 57.2
VMungo1383G1539 Vigna mungo HOM05D003919 ORTHO05D004906 5.8e-46 192.6 164 56.1
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.4e-44 188.0 157 59.2
Psat1g095160 Pisum sativum HOM05D003919 ORTHO05D004906 3.2e-44 186.8 185 50.3
Nitab4.5_0003853g0040 Nicotiana tabacum HOM05D003919 ORTHO05D043505 4.2e-44 186.4 161 56.5
Psat1g148120 Pisum sativum HOM05D003919 ORTHO05D002405 2.4e-36 160.6 132 56.1
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 3.0e-34 153.7 114 57.0
MBI03_g34502_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 1.3e-29 138.3 137 43.8
Cpa.g.sc0.157 Carica papaya HOM05D003919 ORTHO05D004906 4.9e-29 136.3 130 44.6
Psat0s760g0040 Pisum sativum HOM05D003919 ORTHO05D004906 3.5e-27 130.2 214 36.4
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.3e-26 128.3 481 25.2
Oeu025294.1 Olea europaea HOM05D003919 ORTHO05D036952 3.0e-26 127.1 150 44.7
SEGI_22186 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 3.8e-21 110.2 104 49.0
Cpa.g.sc0.159 Carica papaya HOM05D003919 ORTHO05D004906 4.9e-21 109.8 108 48.1
MBI03_g34501_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 8.4e-21 109.0 104 49.0
Oeu055860.1 Olea europaea HOM05D003919 ORTHO05D004906 8.4e-21 109.0 104 50.0
COL.COLO4_13756 Corchorus olitorius HOM05D003919 ORTHO05D004906 3.2e-20 107.1 104 49.0
C07p44430 Brassica napus HOM05D003919 ORTHO05D004906 9.3e-20 105.5 104 48.1
Oeu014156.1 Olea europaea HOM05D003919 ORTHO05D036952 1.6e-19 104.8 162 39.5
Lsat_1_v5_gn_5_23900 Lactuca sativa HOM05D003509 ORTHO05D004205 2.7e-19 104.0 125 43.2
HPP92_012883 Vanilla planifolia HOM05D000456 ORTHO05D004906 2.7e-19 104.0 105 45.7
HPP92_012910 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.3e-17 97.1 97 45.4
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 3.4e-14 87.0 136 43.4
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 4.9e-13 83.2 85 43.5
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 1.0e-10 75.5 58 56.9
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 8.7e-10 72.4 59 57.6
Psat4g139360 Pisum sativum HOM05D007669 ORTHO05D009624 1.1e-09 72.0 67 49.3
Lsat_1_v5_gn_9_102121 Lactuca sativa HOM05D000669 ORTHO05D000679 9.7e-09 68.9 155 29.7
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.5e-06 61.6 33 75.8
DCAR_026252 Daucus carota HOM05D001677 ORTHO05D001682 4.5e-06 60.1 242 26.4


User provided reference genes

Program Settings