Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 2205.3 1112 100.0
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1349.0 1143 61.9
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1340.5 1148 62.3
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1296.6 1095 62.4
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1256.5 1152 57.9
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1251.5 1153 58.0
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1245.3 1149 58.7
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1236.5 1148 57.7
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1217.6 1148 57.4
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1210.3 1159 57.2
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1205.3 1146 56.5
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1204.9 1145 56.2
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1202.6 1159 56.9
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1202.2 1140 58.1
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1201.8 1156 56.6
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1199.9 1143 57.1
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1199.1 1154 57.2
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1194.9 1146 56.3
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1193.3 1136 57.0
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1192.6 1138 57.1
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1191.0 1189 55.8
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1188.7 1138 56.9
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1188.7 1143 55.9
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1186.4 1143 55.6
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1185.2 1148 56.3
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1182.9 1137 56.5
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1179.1 1142 56.4
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1176.8 1138 56.6
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1176.0 1138 56.4
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1174.1 1138 56.4
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1173.3 1152 54.9
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1172.9 1140 56.3
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1171.8 1138 56.5
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1170.6 1161 55.3
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1169.5 1154 54.4
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1168.3 1151 55.3
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1167.9 1152 55.4
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1158.7 1147 55.1
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1158.7 1147 55.2
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1157.9 1146 55.0
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1157.5 1146 55.5
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1157.1 1150 54.9
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1155.6 1143 55.5
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1151.3 1149 54.7
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1150.6 1147 55.2
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1150.2 1141 55.2
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1150.2 1152 54.9
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1146.7 1143 54.3
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1143.6 1135 53.5
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1142.5 1144 54.0
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1141.7 1153 54.4
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1134.4 1145 53.9
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1126.7 1144 53.8
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1117.4 1103 55.9
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1109.4 1134 54.2
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1104.4 1140 53.9
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1102.0 1135 53.7
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1097.8 1136 53.0
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1095.9 1120 53.8
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1095.5 1142 52.5
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1086.6 1142 52.4
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1085.9 1149 53.4
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1078.2 1141 50.7
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1077.8 1163 51.6
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1076.6 1144 50.8
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 1.5e-310 1069.7 1144 50.7
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 1.5e-310 1069.7 1132 51.3
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 9.8e-310 1067.0 1155 51.3
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 4.9e-309 1064.7 1148 52.2
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 4.9e-309 1064.7 1141 50.3
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 6.4e-309 1064.3 1141 50.2
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 6.0e-307 1057.7 1146 50.2
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 9.5e-305 1050.4 1152 50.8
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 2.8e-304 1048.9 1028 54.7
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 2.8e-304 1048.9 1147 51.6
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 2.3e-303 1045.8 1039 54.4
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 2.2e-301 1039.3 1142 49.6
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 2.4e-300 1035.8 1152 49.2
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 3.9e-298 1028.5 1135 49.3
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 5.1e-298 1028.1 1151 49.1
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 6.6e-298 1027.7 1155 51.3
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 5.6e-297 1024.6 1192 49.2
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 5.6e-297 1024.6 1151 49.0
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 1.8e-295 1019.6 1155 50.0
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 4.4e-294 1015.0 1157 50.4
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 6.4e-293 1011.1 1149 48.8
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 8.1e-280 967.6 1146 48.5
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 6.9e-279 964.5 1111 48.6
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 9.6e-257 891.0 1154 45.9
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 5.0e-245 852.0 1145 43.6
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 4.2e-236 822.4 1124 43.1
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 3.7e-232 809.3 918 50.0
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 2.7e-227 793.1 1143 42.3
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 9.1e-223 778.1 599 66.4
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 1.5e-212 744.2 764 51.7
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 2.5e-212 743.4 597 63.1
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.6e-209 733.4 597 63.1
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 7.5e-201 705.3 1152 38.7
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 7.0e-199 698.7 1215 36.9
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 5.8e-193 679.1 1232 36.6
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 7.5e-193 678.7 591 58.7
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 2.9e-192 676.8 598 58.9
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 6.2e-187 659.1 563 60.7
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 4.1e-175 619.8 563 58.4
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 7.3e-164 582.4 611 53.5
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.5e-156 558.1 716 44.7
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 1.4e-154 551.6 596 49.3
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.5e-145 521.5 491 56.0
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 3.4e-145 520.4 469 58.6
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 1.9e-140 504.6 497 55.3
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 5.3e-130 469.9 484 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.7e-80 305.4 503 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.0e-72 279.6 550 33.8
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 6.6e-72 276.9 1590 23.7
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.4e-68 264.2 246 54.1
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 6.6e-64 250.4 747 31.2
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-60 238.4 372 39.8
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 7.1e-42 177.2 249 41.8
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 5.1e-40 171.0 466 29.6
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-38 166.0 494 27.1
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-36 159.8 248 37.5
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 6.4e-35 154.1 366 31.4
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 8.4e-35 153.7 254 36.6
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 2.4e-34 152.1 265 35.8
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-29 136.7 494 25.1
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 4.5e-28 131.3 158 47.5
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 2.9e-27 128.6 156 48.7
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 3.2e-26 125.2 122 52.5
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 9.3e-26 123.6 214 36.0
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 9.6e-23 113.6 111 46.8
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 2.2e-19 102.4 270 31.1
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 2.2e-19 102.4 270 31.1
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 9.3e-18 97.1 142 37.3
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 7.9e-17 94.0 232 28.9
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 1.3e-16 93.2 85 54.1
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 3.9e-16 91.7 230 29.6
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 3.9e-16 91.7 230 29.6
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 1.3e-14 86.7 53 77.4
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 2.8e-14 85.5 187 30.5
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 4.1e-13 81.6 130 35.4
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 6.9e-13 80.9 52 69.2
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 1.4e-10 73.2 60 56.7
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 1.4e-08 66.6 69 50.7
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 3.0e-08 65.5 89 37.1
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 3.9e-08 65.1 151 32.5


User provided reference genes

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