Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 1.7e-132 476.1 252 100.0
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 8.5e-52 208.0 174 62.1
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 1.4e-49 200.7 174 58.0
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 5.2e-49 198.7 166 56.6
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 2.6e-48 196.4 177 58.8
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 4.4e-48 195.7 185 54.6
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 7.5e-48 194.9 201 52.2
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 1.7e-47 193.7 162 59.3
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 2.8e-47 193.0 168 58.3
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.4e-46 190.7 133 64.7
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 1.8e-46 190.3 152 61.2
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 3.1e-46 189.5 150 59.3
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 5.3e-46 188.7 150 58.7
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 7.0e-46 188.3 179 53.6
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 7.0e-46 188.3 179 53.6
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 9.1e-46 188.0 177 57.1
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 9.1e-46 188.0 172 55.8
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.2e-45 187.6 178 55.6
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 2.0e-45 186.8 172 54.7
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 2.0e-45 186.8 164 55.5
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 2.7e-45 186.4 151 62.9
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 2.7e-45 186.4 175 53.7
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 3.5e-45 186.0 170 58.2
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 4.5e-45 185.7 170 57.1
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 1.7e-44 183.7 134 64.2
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 3.8e-44 182.6 200 49.5
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 5.0e-44 182.2 163 54.0
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 5.0e-44 182.2 166 54.8
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 6.5e-44 181.8 167 55.7
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 8.5e-44 181.4 156 57.1
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 2.5e-43 179.9 157 59.9
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 2.5e-43 179.9 172 51.7
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 2.5e-43 179.9 172 54.1
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 7.2e-43 178.3 131 65.6
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 9.4e-43 177.9 160 57.5
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 1.6e-42 177.2 132 63.6
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 4.7e-42 175.6 153 58.2
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 4.7e-42 175.6 153 58.2
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 8.0e-42 174.9 161 57.1
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 8.0e-42 174.9 194 51.0
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 8.0e-42 174.9 159 55.3
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 8.0e-42 174.9 159 55.3
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 1.4e-41 174.1 185 50.8
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 3.0e-41 172.9 174 54.0
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 8.8e-41 171.4 171 52.6
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.2e-40 171.0 146 58.2
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 3.4e-40 169.5 167 53.3
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.4e-40 169.5 174 49.4
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 4.4e-40 169.1 155 54.2
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 5.7e-40 168.7 169 53.3
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 7.5e-40 168.3 134 59.7
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.3e-39 167.5 128 61.7
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.3e-39 167.5 169 53.8
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.7e-39 167.2 150 56.7
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 2.8e-39 166.4 137 59.9
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 8.3e-39 164.9 149 53.0
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 8.3e-39 164.9 169 55.0
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 2.7e-37 159.8 135 55.6
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 3.5e-37 159.5 132 57.6
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 4.5e-37 159.1 191 46.1
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 7.7e-37 158.3 156 57.1
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.3e-36 157.5 161 50.3
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 2.9e-36 156.4 154 50.6
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 1.1e-35 154.5 123 64.2
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.9e-35 153.7 171 47.4
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 1.9e-35 153.7 176 45.5
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 1.9e-35 153.7 146 55.5
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 2.5e-35 153.3 112 60.7
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 2.5e-35 153.3 139 56.8
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 4.2e-35 152.5 159 50.9
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 4.2e-35 152.5 159 50.9
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 9.5e-35 151.4 130 53.8
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 3.6e-34 149.4 137 54.0
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 4.7e-34 149.1 157 47.8
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 6.1e-34 148.7 167 46.1
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 6.1e-34 148.7 157 47.8
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 6.1e-34 148.7 132 58.3
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 8.0e-34 148.3 98 66.3
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 1.0e-33 147.9 123 56.9
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 1.4e-33 147.5 123 56.1
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.8e-33 147.1 159 47.2
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.8e-33 147.1 159 47.2
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 1.8e-33 147.1 167 45.5
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 5.2e-33 145.6 164 48.8
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 1.2e-32 144.4 123 55.3
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 1.2e-32 144.4 153 48.4
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.2e-32 144.4 225 44.0
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 4.4e-32 142.5 149 49.0
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 5.7e-32 142.1 119 57.1
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 1.3e-31 141.0 128 55.5
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 3.7e-31 139.4 142 50.7
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 1.1e-30 137.9 142 50.0
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 1.1e-30 137.9 142 50.0
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 7.0e-30 135.2 125 50.4
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 7.8e-29 131.7 109 62.4
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 1.2e-26 124.4 138 48.6
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.0e-24 117.1 152 44.1
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.3e-23 114.4 152 41.4
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 1.1e-22 111.3 130 46.2
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 1.1e-22 111.3 97 54.6
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 7.0e-22 108.6 117 50.4
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 4.6e-21 105.9 128 46.1
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 6.0e-21 105.5 73 63.0
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 5.0e-20 102.4 111 50.5
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 6.6e-20 102.1 138 39.9
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 1.1e-19 101.3 170 41.2
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 4.0e-17 92.8 111 42.3
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 1.6e-13 80.9 107 41.1
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 1.7e-12 77.4 56 66.1
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 1.5e-11 74.3 110 38.2
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 2.6e-08 63.5 112 31.2
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 9.9e-08 61.6 87 37.9
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 6.4e-07 58.9 121 33.9
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 6.4e-07 58.9 81 34.6
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 1.4e-06 57.8 132 34.1
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 1.4e-06 57.8 158 27.8
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.4e-06 57.8 131 29.0
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 2.4e-06 57.0 93 33.3
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 2.4e-06 57.0 84 34.5
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 2.4e-06 57.0 130 30.0
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 3.2e-06 56.6 85 38.8
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 4.1e-06 56.2 85 34.1
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 4.1e-06 56.2 87 35.6
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 4.1e-06 56.2 86 33.7
Haze_15396 Corylus avellana HOM05D002878 ORTHO05D003649 5.4e-06 55.8 86 39.5
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 5.4e-06 55.8 126 28.6
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 5.4e-06 55.8 131 29.0
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 7.1e-06 55.5 150 25.3
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 7.1e-06 55.5 97 33.0
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 7.1e-06 55.5 81 34.6
Duzib147G1525 Durio zibethinus HOM05D002878 ORTHO05D003649 9.2e-06 55.1 79 35.4
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 9.2e-06 55.1 128 28.1


User provided reference genes

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