Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 0.0e+00 2478.7 1441 100.0
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 2.2e-189 667.5 1351 39.3
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 2.2e-184 651.0 1448 37.8
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 2.2e-184 651.0 1448 37.8
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 3.0e-178 630.6 1466 36.7
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 4.0e-178 630.2 1368 38.2
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.5e-172 611.7 1336 37.8
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.5e-172 611.7 1336 37.8
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 9.8e-169 599.0 1512 34.6
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 6.0e-166 589.7 1429 36.7
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.7e-165 588.2 1525 34.5
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 2.3e-165 587.8 1458 35.6
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 3.9e-165 587.0 1438 36.4
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 3.9e-165 587.0 1495 35.1
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 6.8e-162 576.2 1406 36.6
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 7.5e-161 572.8 1394 36.5
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.4e-159 568.5 1414 35.6
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 1.6e-158 565.1 1426 34.9
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 5.1e-157 560.1 1525 33.4
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.3e-156 557.0 1381 35.4
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 7.3e-156 556.2 1382 36.0
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 9.5e-156 555.8 1463 35.3
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 9.5e-156 555.8 1411 36.3
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 4.7e-155 553.5 1481 34.2
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 6.2e-155 553.1 1579 33.9
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 2.3e-154 551.2 1442 35.0
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 5.2e-154 550.1 1342 37.0
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 9.9e-153 545.8 1469 35.2
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 2.0e-145 521.5 1354 36.0
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 3.8e-144 517.3 1523 33.4
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 5.4e-143 513.5 1556 32.2
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 9.2e-143 512.7 1485 32.7
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 2.1e-142 511.5 1425 34.0
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 2.7e-142 511.1 1481 33.8
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 1.3e-141 508.8 1467 34.4
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 3.6e-139 500.7 1465 32.3
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 1.8e-138 498.4 1425 32.6
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.5e-137 495.4 1400 34.5
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 3.4e-137 494.2 1356 33.0
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 6.4e-136 490.0 1527 32.9
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.1e-135 489.2 1464 31.8
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.6e-134 483.8 1388 34.1
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 6.0e-134 483.4 1410 33.3
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 5.1e-133 480.3 1364 33.1
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 4.3e-132 477.2 1505 32.6
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 1.6e-131 475.3 1390 33.7
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.4e-130 472.2 1401 32.4
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 1.4e-130 472.2 1419 33.1
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.4e-130 471.5 1479 32.7
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 6.9e-130 469.9 1408 32.4
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 9.0e-130 469.5 1450 32.0
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 7.6e-129 466.5 1624 30.8
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 1.7e-128 465.3 1163 35.2
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 2.9e-128 464.5 1500 32.1
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 3.8e-128 464.2 1447 32.0
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 8.4e-128 463.0 1471 32.4
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.4e-127 461.5 1484 31.1
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 1.2e-126 459.1 1418 31.2
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 2.1e-126 458.4 1331 32.2
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 3.5e-126 457.6 1446 30.9
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 4.6e-126 457.2 1390 31.6
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 7.9e-126 456.4 1497 31.1
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 3.9e-125 454.1 1390 31.9
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 8.7e-125 453.0 1369 30.8
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.1e-124 452.6 1422 32.3
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 4.8e-123 447.2 1443 31.9
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 6.2e-123 446.8 1448 30.9
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 8.1e-123 446.4 1474 31.8
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 8.1e-123 446.4 1467 30.8
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 9.0e-122 443.0 1347 32.6
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.6e-121 441.4 1495 30.7
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 7.6e-121 439.9 1367 31.2
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 2.5e-119 434.9 1390 31.1
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 2.1e-118 431.8 1497 30.5
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 5.1e-117 427.2 1493 30.1
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 4.3e-116 424.1 844 34.1
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.3e-112 412.5 1380 30.9
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 2.3e-109 401.7 1400 30.2
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 8.2e-107 393.3 1469 28.7
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 1.3e-104 386.0 1411 30.8
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.9e-103 382.1 1450 30.1
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 3.4e-97 361.3 866 36.7
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 5.9e-97 360.5 974 35.2
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.8e-93 349.0 868 34.9
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 3.1e-90 338.2 1374 28.7
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.5e-88 330.1 828 35.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.1e-84 319.7 1370 27.9
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 8.2e-83 313.5 665 33.7
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 1.1e-82 313.2 1333 28.9
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 7.5e-68 263.8 906 32.5
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 8.6e-64 250.4 775 35.0
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 7.3e-55 220.7 539 33.6
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 8.0e-54 217.2 198 52.0
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 2.6e-52 212.2 580 32.1
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 6.4e-51 207.6 937 29.1
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 6.4e-51 207.6 333 42.0
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.1e-50 206.8 326 41.4
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 2.7e-49 202.2 524 31.9
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 5.6e-47 194.5 969 26.3
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 3.1e-45 188.7 712 26.3
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 3.4e-44 185.3 1424 25.0
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.4e-44 184.9 146 58.2
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.9e-43 182.2 519 29.5
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 9.2e-42 177.2 800 30.5
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 4.6e-41 174.9 277 40.8
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 3.9e-40 171.8 680 27.1
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.1e-39 170.2 806 24.8
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.4e-34 152.5 233 42.5
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.9e-32 145.2 192 42.7
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 3.1e-29 135.6 655 30.7
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 2.0e-28 132.9 505 33.7
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.7e-27 129.8 598 30.8
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.1e-25 122.9 970 27.4
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 2.7e-25 122.5 275 39.3
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 6.6e-24 117.9 462 29.0
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 1.1e-23 117.1 147 39.5
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.8e-21 109.8 310 29.4
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 6.9e-21 107.8 409 31.5
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 1.5e-20 106.7 613 28.7
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.3e-14 87.0 110 37.3
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 2.8e-14 85.9 89 47.2
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.7e-11 76.6 805 24.6
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 4.9e-11 75.1 62 50.0
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 1.1e-10 73.9 351 33.0
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 1.4e-10 73.6 313 33.2
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 1.9e-10 73.2 115 46.1
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.8e-08 66.6 59 47.5


User provided reference genes

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