Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0000110 Simmondsia chinensis HOM05D000001 ORTHO05D004044 6.4e-241 837.0 428 100.0
AUR62037726 Chenopodium quinoa HOM05D000001 ORTHO05D004044 6.8e-134 481.5 421 61.8
EL10Ac2g02405 Beta vulgaris HOM05D000001 ORTHO05D004044 3.7e-132 475.7 415 61.0
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 7.3e-128 461.5 415 58.8
Manes.16G087000 Manihot esculenta HOM05D000001 ORTHO05D004044 2.3e-126 456.4 422 58.8
TAR667G0003 Trochodendron aralioides HOM05D000001 ORTHO05D004044 6.8e-126 454.9 415 58.8
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 1.5e-125 453.8 419 58.0
AUR62020279 Chenopodium quinoa HOM05D000001 ORTHO05D004044 1.1e-123 447.6 420 59.0
Ciclev10007851m.g Citrus clementina HOM05D000001 ORTHO05D004044 1.9e-123 446.8 416 57.2
QL02p017294 Quercus lobata HOM05D000001 ORTHO05D004044 2.0e-122 443.4 415 57.3
Potri.006G218900 Populus trichocarpa HOM05D000001 ORTHO05D004044 1.0e-121 441.0 419 58.0
Gohir.A05G037900 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.9e-120 436.8 418 56.9
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 4.3e-120 435.6 420 57.1
Gorai.009G039900 Gossypium raimondii HOM05D000001 ORTHO05D004044 3.6e-119 432.6 418 56.2
Gohir.D05G039400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.4e-118 430.6 418 56.2
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 3.1e-118 429.5 418 55.7
Haze_18323 Corylus avellana HOM05D000001 ORTHO05D004044 4.0e-118 429.1 440 53.2
Thecc.09G065500 Theobroma cacao HOM05D000001 ORTHO05D004044 6.8e-118 428.3 418 56.5
CSS0022708 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 1.2e-117 427.6 417 57.3
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 1.2e-117 427.6 419 57.5
TAR624G0865 Trochodendron aralioides HOM05D000001 ORTHO05D004044 2.2e-116 423.3 405 56.8
FAN24G2651 Fragaria x ananassa HOM05D000001 ORTHO05D004044 1.4e-115 420.6 414 55.6
FvH4_2g30791 Fragaria vesca HOM05D000001 ORTHO05D004044 5.4e-115 418.7 417 55.2
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 1.2e-114 417.5 417 54.9
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 3.5e-114 416.0 416 55.5
TWI32G1352 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 7.8e-114 414.8 417 54.7
MD08G1046100 Malus domestica HOM05D000001 ORTHO05D004044 1.3e-113 414.1 416 55.5
FAN27G1566 Fragaria x ananassa HOM05D000001 ORTHO05D004044 1.7e-113 413.7 417 54.4
Prupe.1G402100 Prunus persica HOM05D000001 ORTHO05D004044 2.3e-113 413.3 415 54.5
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 3.3e-112 409.5 416 52.9
CiPaw.16G067100 Carya illinoinensis HOM05D000001 ORTHO05D004044 5.6e-112 408.7 420 55.0
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 7.3e-112 408.3 413 54.5
Duzib187G1939 Durio zibethinus HOM05D000001 ORTHO05D004044 1.2e-111 407.5 418 54.8
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 1.2e-111 407.5 421 54.4
TWI34G0443 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 3.6e-111 406.0 421 54.6
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 1.1e-110 404.4 415 55.4
VMungo1309G1461 Vigna mungo HOM05D000001 ORTHO05D004044 8.9e-110 401.4 418 54.1
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 1.2e-109 401.0 418 53.6
TAR626G1342 Trochodendron aralioides HOM05D000001 ORTHO05D004044 1.2e-109 401.0 414 54.3
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 2.0e-109 400.2 418 54.1
Glyma.17G219600 Glycine max HOM05D000001 ORTHO05D004044 2.6e-109 399.8 416 54.3
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 9.9e-109 397.9 417 53.2
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 9.9e-109 397.9 416 53.8
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 2.2e-108 396.7 414 54.1
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 2.9e-108 396.4 415 54.9
Duzib168G1373 Durio zibethinus HOM05D000001 ORTHO05D004044 3.7e-108 396.0 418 53.6
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 4.9e-108 395.6 415 54.5
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 8.3e-108 394.8 416 53.4
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 8.3e-108 394.8 414 53.6
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 1.1e-107 394.4 416 53.1
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 7.1e-107 391.7 418 52.4
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 2.1e-106 390.2 418 53.8
Hund25544 Selenicereus undatus HOM05D000001 ORTHO05D004044 3.5e-106 389.4 470 49.8
ClCG05G015870 Citrullus lanatus HOM05D000001 ORTHO05D004044 6.0e-106 388.7 417 52.8
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 1.3e-105 387.5 421 53.2
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 3.9e-105 386.0 419 52.5
PSO724G0994 Papaver somniferum HOM05D000001 ORTHO05D004044 8.6e-105 384.8 420 51.9
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 8.6e-105 384.8 419 50.6
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 1.1e-104 384.4 415 52.5
Actinidia29292 Actinidia chinensis HOM05D000001 ORTHO05D004044 2.5e-104 383.3 421 52.5
CSS0007474 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 3.3e-104 382.9 418 52.4
Lj5g0004443 Lotus japonicus HOM05D000001 ORTHO05D004044 4.3e-104 382.5 417 53.0
TWI63G1385 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 5.6e-104 382.1 418 52.9
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 7.3e-104 381.7 416 51.7
Manes.03G056801 Manihot esculenta HOM05D000001 ORTHO05D004044 7.3e-104 381.7 423 52.2
PGR142G0487 Punica granatum HOM05D000001 ORTHO05D004044 1.6e-103 380.6 418 51.4
Carub.0004s0615 Capsella rubella HOM05D000001 ORTHO05D004044 2.1e-103 380.2 420 52.1
CsaV3_4G036160 Cucumis sativus L. HOM05D000001 ORTHO05D004044 2.8e-103 379.8 416 51.4
PSO135G0765 Papaver somniferum HOM05D000001 ORTHO05D004044 1.1e-102 377.9 420 51.7
TPR.G38869 Trifolium pratense HOM05D000001 ORTHO05D004044 1.4e-102 377.5 418 50.2
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 2.4e-102 376.7 415 52.0
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 4.0e-102 375.9 417 51.8
Sp4g06560 Schrenkiella parvula HOM05D000001 ORTHO05D004044 5.2e-102 375.6 422 50.7
Gorai.013G221300 Gossypium raimondii HOM05D000001 ORTHO05D004044 1.2e-101 374.4 418 51.0
AT2G26280 Arabidopsis thaliana HOM05D000001 ORTHO05D004044 1.5e-101 374.0 418 51.9
Gohir.A13G188300 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.5e-101 374.0 418 50.7
Rhsim11G0001100 Rhododendron simsii HOM05D000001 ORTHO05D004044 2.0e-101 373.6 418 50.5
MBI19_g47982_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 4.4e-101 372.5 415 50.8
Thhalv10001942m.g Eutrema salsugineum HOM05D000001 ORTHO05D004044 5.8e-101 372.1 429 50.6
SalBow1G0904 Salvia bowleyana HOM05D000001 ORTHO05D004044 5.8e-101 372.1 418 51.7
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 1.3e-100 370.9 419 50.1
Sabra18G0045700 Salix brachista HOM05D000001 ORTHO05D004044 1.7e-100 370.5 437 50.6
AL4G18860 Arabidopsis lyrata HOM05D000001 ORTHO05D004044 2.9e-100 369.8 420 50.7
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 3.8e-100 369.4 417 50.8
Psat6g024040 Pisum sativum HOM05D000001 ORTHO05D004044 6.4e-100 368.6 417 51.1
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 1.1e-99 367.9 417 51.8
VMungo0647G0604 Vigna mungo HOM05D000001 ORTHO05D004044 1.1e-99 367.9 418 52.2
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 1.4e-99 367.5 420 49.8
Gohir.D13G195200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.4e-99 366.7 418 50.2
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 2.4e-99 366.7 418 51.0
Ca_13092_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004044 5.4e-99 365.5 418 50.5
Aqoxy7G04098 Aquilegia oxysepala HOM05D000001 ORTHO05D004044 4.6e-98 362.5 417 49.2
CiPaw.15G090000 Carya illinoinensis HOM05D000001 ORTHO05D004044 1.0e-97 361.3 416 50.0
Lj7C209T10 Lonicera japonica HOM05D000001 ORTHO05D004044 2.3e-97 360.1 424 50.5
Lalb_Chr22g0349641 Lupinus albus HOM05D000001 ORTHO05D004044 2.3e-97 360.1 415 50.4
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 3.0e-97 359.8 418 50.2
Medtr1g014880 Medicago truncatula HOM05D000001 ORTHO05D004044 3.0e-97 359.8 441 47.4
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 8.7e-97 358.2 417 49.4
Actinidia16899 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.5e-96 357.5 421 49.4
Dinv41848 Davidia involucrata HOM05D000001 ORTHO05D004044 9.6e-96 354.8 415 49.4
Lj1g0000975 Lotus japonicus HOM05D000001 ORTHO05D004044 6.9e-94 348.6 416 48.6
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 9.0e-94 348.2 416 51.7
ECA236G1474 Erigeron canadensis HOM05D000001 ORTHO05D004044 2.0e-93 347.1 421 49.2
Lalb_Chr11g0063391 Lupinus albus HOM05D000001 ORTHO05D004044 7.6e-93 345.1 415 48.2
MBI19_g09929_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 9.9e-93 344.7 393 49.4
DCAR_003727 Daucus carota HOM05D000001 ORTHO05D004044 4.2e-91 339.3 421 47.0
Sed0004805 Sechium edule HOM05D000001 ORTHO05D004044 1.2e-90 337.8 429 49.2
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 1.6e-90 337.4 416 49.5
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 6.6e-89 332.0 416 50.0
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 9.6e-88 328.2 418 48.8
BcaB08g35273 Brassica carinata HOM05D000001 ORTHO05D004044 1.6e-87 327.4 426 48.6
Actinidia29353 Actinidia chinensis HOM05D000001 ORTHO05D004044 4.8e-87 325.9 411 47.2
ECA240G1094 Erigeron canadensis HOM05D000001 ORTHO05D004044 6.2e-87 325.5 416 46.2
Actinidia39673 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.2e-85 321.2 413 47.7
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 3.4e-85 319.7 418 47.8
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 9.9e-85 318.2 416 47.8
Duzib150G1238 Durio zibethinus HOM05D000001 ORTHO05D004044 1.3e-84 317.8 416 46.2
Nn8g38610 Nelumbo nucifera HOM05D000001 ORTHO05D004044 3.8e-84 316.2 398 46.5
TAR636G0641 Trochodendron aralioides HOM05D000001 ORTHO05D004044 2.4e-83 313.5 306 56.2
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 3.2e-83 313.2 408 47.1
unitig_748.g8235 Utricularia gibba HOM05D000001 ORTHO05D004044 9.3e-83 311.6 399 46.9
Lsat_1_v5_gn_8_70460 Lactuca sativa HOM05D000001 ORTHO05D004044 1.3e-81 307.8 420 47.4
unitig_4.g30334 Utricularia gibba HOM05D000001 ORTHO05D004044 2.5e-80 303.5 398 46.0
BraA09t40935Z Brassica rapa HOM05D000001 ORTHO05D004044 1.6e-79 300.8 428 48.8
unitig_32.g10913 Utricularia gibba HOM05D000001 ORTHO05D004044 2.8e-79 300.1 415 44.8
A09p55320 Brassica napus HOM05D000001 ORTHO05D004044 4.8e-79 299.3 428 48.4
BolC8t51400H Brassica oleracea HOM05D000001 ORTHO05D004044 4.0e-78 296.2 430 48.8
C08p38250 Brassica napus HOM05D000001 ORTHO05D004044 2.6e-77 293.5 431 48.7
HanXRQChr03g0067161 Helianthus annuus HOM05D000001 ORTHO05D004044 2.6e-77 293.5 403 46.9
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.3e-76 291.2 301 53.8
vmacro00208 Vaccinium macrocarpon HOM05D000001 ORTHO05D004044 2.5e-75 287.0 657 32.9
BcaC07g40830 Brassica carinata HOM05D000001 ORTHO05D004044 3.5e-74 283.1 433 47.8
CARHR115120 Cardamine hirsuta HOM05D000001 ORTHO05D004044 2.2e-68 263.8 317 47.6
CDE05G2793 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 5.0e-68 262.7 416 40.4
HanXRQChr09g0248701 Helianthus annuus HOM05D000001 ORTHO05D004044 5.1e-65 252.7 424 42.9
ATR0598G100 Amborella trichopoda HOM05D000001 ORTHO05D004044 6.7e-65 252.3 419 41.1
Lsat_1_v5_gn_8_149721 Lactuca sativa HOM05D000001 ORTHO05D004044 1.1e-64 251.5 425 43.8
Oeu060162.1 Olea europaea HOM05D000001 ORTHO05D004044 3.1e-62 243.4 318 45.6
SalBow4G2835 Salvia bowleyana HOM05D000001 ORTHO05D004044 1.3e-60 238.0 389 41.9
Migut.A00058 Erythranthe guttata HOM05D000001 ORTHO05D004044 1.2e-58 231.5 403 40.2
CSS0015944 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 2.0e-56 224.2 265 48.7
HPP92_016599 Vanilla planifolia HOM05D000001 ORTHO05D004044 2.5e-56 223.8 421 38.5
Psat0s3154g0080 Pisum sativum HOM05D000001 ORTHO05D004044 8.2e-55 218.8 280 44.3
SEGI_25644 Sequoiadendron giganteum HOM05D000001 ORTHO05D004044 8.2e-55 218.8 406 37.4
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 2.4e-54 217.2 412 40.8
Nn6g35692 Nelumbo nucifera HOM05D000001 ORTHO05D004044 2.4e-54 217.2 262 48.5
HPP92_011061 Vanilla planifolia HOM05D000001 ORTHO05D004044 2.0e-53 214.2 420 37.4
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 3.4e-53 213.4 421 39.9
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 3.4e-53 213.4 421 39.9
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 1.3e-52 211.5 419 39.4
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 3.8e-52 209.9 420 39.8
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 1.1e-51 208.4 420 39.5
Gohir.A08G247200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.4e-51 208.0 421 35.4
Gorai.004G286100 Gossypium raimondii HOM05D000001 ORTHO05D004044 9.4e-51 205.3 421 35.2
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 5.1e-49 199.5 425 37.2
Gohir.D08G268400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.1e-48 198.4 421 34.4
Zm00001eb278590 Zea mays HOM05D000001 ORTHO05D004044 1.2e-45 188.3 424 37.5
Cpa.g.sc82.5 Carica papaya HOM05D000001 ORTHO05D004044 1.6e-42 177.9 153 59.5
CDE05G0380 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 4.4e-40 169.9 266 39.8
SHI28008 Sapria himalayana HOM05D000001 ORTHO05D004044 4.2e-35 153.3 417 35.5
Os02g0780550 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 9.4e-35 152.1 414 34.5
Psat0s3154g0240 Pisum sativum HOM05D000001 ORTHO05D004044 3.7e-31 140.2 201 41.8
Psat0s3775g0160 Pisum sativum HOM05D000001 ORTHO05D004044 3.7e-31 140.2 201 41.8
SGA_v2.0_scaffold20G09145 Striga asiatica HOM05D000001 ORTHO05D004044 9.1e-30 135.6 421 30.4
Zm00001eb005950 Zea mays HOM05D000001 ORTHO05D004044 7.2e-27 125.9 414 30.0
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.4e-25 121.7 130 52.3
Os03g0180300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 6.8e-25 119.4 410 29.5
Pp3c26_4880 Physcomitrium patens HOM05D000001 ORTHO05D004044 8.3e-23 112.5 423 31.9
SMO356G0739 Selaginella moellendorffii HOM05D000001 ORTHO05D004044 1.2e-21 108.6 399 28.3
Zm00001eb373910 Zea mays HOM05D000001 ORTHO05D004044 1.0e-20 105.5 244 33.2
Pp3c4_25250 Physcomitrium patens HOM05D000001 ORTHO05D004044 1.7e-20 104.8 444 31.1
Peaxi162Scf00365g00014 Petunia axillaris HOM05D000001 ORTHO05D004044 5.2e-17 93.2 102 51.0
CBR_g37677 Chara braunii HOM05D000001 ORTHO05D004044 8.6e-12 75.9 202 31.2
CDE05G1886 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 1.1e-11 75.5 94 47.9
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 8.0e-10 69.3 65 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1386 Anthoceros agrestis HOM05D000001 ORTHO05D004044 1.5e-08 65.1 424 26.2
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 6.4e-07 59.7 96 37.5
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.4e-06 58.5 67 43.3
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.4e-06 58.5 67 43.3
Solyc08g061455.1 Solanum lycopersicum HOM05D000001 ORTHO05D004044 1.9e-06 58.2 83 47.0
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.4e-06 57.8 96 37.5


User provided reference genes

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