Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 7.4e-206 720.3 364 100.0
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 3.0e-151 538.9 335 78.5
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 8.9e-151 537.3 334 78.4
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 8.6e-146 520.8 339 76.1
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 8.6e-146 520.8 335 77.0
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.6e-144 516.5 340 75.9
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 3.1e-143 512.3 335 74.6
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 4.0e-143 511.9 332 75.0
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 8.9e-143 510.8 332 76.2
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 8.9e-143 510.8 332 76.2
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 2.6e-142 509.2 332 74.4
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 4.4e-142 508.4 332 75.9
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 1.3e-141 506.9 341 73.9
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 1.3e-141 506.9 332 75.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 2.2e-141 506.1 341 75.1
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.9e-141 505.8 332 75.6
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.9e-141 505.8 333 76.0
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.7e-141 505.4 332 75.3
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 3.7e-141 505.4 332 74.7
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 8.3e-141 504.2 332 74.7
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 8.3e-141 504.2 331 74.9
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.1e-140 503.8 341 74.2
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.1e-140 503.8 346 73.1
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.1e-140 503.8 337 74.8
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.9e-140 503.1 341 73.3
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 2.4e-140 502.7 341 72.1
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.2e-140 502.3 332 75.0
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 4.1e-140 501.9 332 75.6
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 4.1e-140 501.9 341 74.2
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 5.4e-140 501.5 333 75.4
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 1.2e-139 500.4 332 75.0
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.2e-139 500.4 334 74.6
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.2e-139 500.4 334 75.7
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.6e-139 500.0 348 71.8
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.6e-139 500.0 332 75.6
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 2.0e-139 499.6 332 75.3
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.0e-139 499.6 332 73.5
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 2.0e-139 499.6 343 74.1
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 2.7e-139 499.2 334 74.6
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 2.7e-139 499.2 333 73.6
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 4.6e-139 498.4 332 74.1
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 4.6e-139 498.4 333 74.5
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 6.0e-139 498.0 332 74.7
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 6.0e-139 498.0 333 75.1
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 6.0e-139 498.0 332 74.1
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 7.8e-139 497.7 332 73.5
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.0e-138 497.3 333 74.8
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.7e-138 496.5 332 72.9
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.7e-138 496.5 338 74.0
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.3e-138 496.1 331 74.3
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 3.9e-138 495.4 331 73.7
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 8.6e-138 494.2 333 73.6
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 3.3e-137 492.3 334 74.3
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 4.3e-137 491.9 332 72.9
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 4.3e-137 491.9 333 72.7
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 5.6e-137 491.5 341 71.6
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 7.3e-137 491.1 343 72.6
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 9.5e-137 490.7 343 72.6
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 9.5e-137 490.7 332 73.8
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.2e-136 490.3 332 73.2
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 6.2e-136 488.0 333 72.4
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 6.2e-136 488.0 338 72.2
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 8.0e-136 487.6 333 72.1
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.4e-135 486.9 334 72.5
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.4e-135 486.9 332 71.7
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.4e-135 486.9 333 73.6
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 4.0e-135 485.3 334 74.9
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 5.2e-135 485.0 332 72.6
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 6.8e-135 484.6 334 71.6
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 6.8e-135 484.6 332 72.6
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 8.9e-135 484.2 332 72.6
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 8.9e-135 484.2 333 72.1
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.2e-134 483.8 332 72.6
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 1.2e-134 483.8 342 72.5
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 3.4e-134 482.3 332 71.4
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 3.4e-134 482.3 332 71.7
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 7.5e-134 481.1 332 72.0
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.3e-133 480.3 343 71.7
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.7e-133 479.9 343 70.3
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 1.7e-133 479.9 334 73.4
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.7e-133 479.9 334 72.8
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 2.2e-133 479.6 334 72.5
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 2.2e-133 479.6 341 70.7
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 2.2e-133 479.6 333 73.0
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.9e-133 479.2 332 71.7
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 6.4e-133 478.0 334 72.8
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 8.3e-133 477.6 335 70.7
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.4e-132 476.1 332 71.1
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 3.2e-132 475.7 334 69.8
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 5.4e-132 474.9 332 70.5
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 7.0e-132 474.6 336 70.2
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 9.2e-132 474.2 334 69.5
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 9.2e-132 474.2 332 70.5
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.2e-131 473.8 332 70.8
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.6e-131 473.4 334 69.2
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.6e-131 473.4 332 70.5
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 2.1e-131 473.0 334 69.2
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 2.1e-131 473.0 334 69.2
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 2.7e-131 472.6 332 71.4
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 2.7e-131 472.6 334 69.2
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.7e-131 472.6 335 71.6
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 4.6e-131 471.9 334 69.2
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.6e-131 471.9 343 69.4
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.6e-131 471.9 333 69.4
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-130 470.3 332 70.2
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.3e-130 469.5 342 69.9
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 6.6e-130 468.0 334 68.9
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 8.6e-130 467.6 332 68.7
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.5e-129 466.8 333 69.1
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.2e-128 463.8 335 69.0
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.6e-128 463.4 341 68.6
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.8e-127 459.9 343 70.6
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 3.1e-127 459.1 333 67.9
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.6e-126 456.1 341 67.2
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.8e-126 454.9 332 67.2
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 2.9e-125 452.6 340 68.8
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 4.1e-124 448.7 335 67.2
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 2.8e-120 436.0 332 65.4
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 4.9e-117 425.2 337 64.1
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 6.2e-112 408.3 332 61.7
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 2.0e-110 403.3 269 74.7
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 2.1e-107 393.3 332 59.0
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.8e-104 382.9 256 76.6
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 8.1e-104 381.3 336 58.6
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.2e-99 367.5 224 79.9
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.8e-95 353.6 340 57.1
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 3.1e-95 352.8 340 57.1
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 9.0e-95 351.3 340 56.8
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.1e-92 344.4 270 65.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 2.6e-65 253.4 161 76.4
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 8.2e-64 248.4 340 45.3
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 9.1e-63 245.0 240 56.2
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 2.9e-61 240.0 352 41.5
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 3.1e-47 193.4 255 43.9
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.3e-37 161.4 100 82.0
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 2.8e-35 153.7 221 40.7
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 5.2e-34 149.4 135 57.0
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 9.5e-28 128.6 106 66.0
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 5.8e-25 119.4 82 69.5
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 3.3e-20 103.6 75 62.7
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 3.3e-20 103.6 75 62.7
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 2.1e-19 100.9 185 40.0
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 3.6e-19 100.1 75 61.3
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.1e-18 98.6 76 63.2
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 1.2e-14 85.1 67 56.7
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 5.1e-13 79.7 67 53.7
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 6.0e-06 56.2 79 41.8


User provided reference genes

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