Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 6.0e-135 484.2 246 100.0
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.2e-73 279.6 320 50.3
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 5.5e-72 275.0 371 46.1
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 6.3e-68 261.5 350 45.4
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 5.0e-65 251.9 343 44.9
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 5.6e-64 248.4 367 42.8
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 2.8e-63 246.1 364 42.6
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 2.3e-62 243.0 363 43.0
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 8.9e-62 241.1 360 41.7
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 1.5e-61 240.4 363 41.9
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 2.0e-61 240.0 357 42.6
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 1.7e-60 236.9 362 42.0
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 1.1e-59 234.2 363 41.9
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 5.4e-59 231.9 362 40.3
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 7.0e-59 231.5 362 41.7
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 7.0e-59 231.5 363 42.1
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 9.2e-59 231.1 355 42.3
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.2e-58 230.7 362 40.9
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 4.6e-58 228.8 363 39.7
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 4.6e-58 228.8 362 41.4
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 5.9e-58 228.4 361 40.4
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 5.9e-58 228.4 364 39.6
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 7.8e-58 228.0 365 40.8
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 1.3e-57 227.3 375 40.0
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 1.7e-57 226.9 364 41.5
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 3.0e-57 226.1 313 41.9
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 1.1e-56 224.2 363 39.7
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.1e-56 224.2 361 40.7
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 2.5e-56 223.0 364 40.7
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 4.3e-56 222.2 362 40.9
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 5.6e-56 221.9 367 39.8
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 7.3e-56 221.5 363 40.2
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 9.5e-56 221.1 354 41.5
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 9.5e-56 221.1 289 47.1
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.2e-55 220.7 344 39.5
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 1.6e-55 220.3 380 37.9
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 1.0e-54 217.6 424 35.6
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 1.0e-54 217.6 369 40.1
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 1.4e-54 217.2 363 40.2
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 2.3e-54 216.5 366 40.4
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 2.3e-54 216.5 374 37.2
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 3.1e-54 216.1 363 37.5
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 6.8e-54 214.9 363 38.8
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 6.8e-54 214.9 364 39.6
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 8.9e-54 214.5 374 36.6
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 2.0e-53 213.4 363 37.7
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 2.0e-53 213.4 367 37.6
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 2.6e-53 213.0 376 38.3
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 2.6e-53 213.0 358 38.8
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 3.4e-53 212.6 378 38.1
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 7.5e-53 211.5 363 37.5
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 7.5e-53 211.5 366 38.5
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 9.8e-53 211.1 362 37.6
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 1.3e-52 210.7 363 38.6
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.3e-52 210.7 359 38.2
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 1.7e-52 210.3 363 38.3
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.7e-52 210.3 365 38.4
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 2.9e-52 209.5 362 38.1
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 2.9e-52 209.5 386 38.1
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 3.7e-52 209.1 362 37.3
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 3.7e-52 209.1 364 37.6
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 3.7e-52 209.1 388 36.9
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 3.7e-52 209.1 366 38.3
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 4.9e-52 208.8 251 47.0
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 6.4e-52 208.4 258 46.9
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 8.3e-52 208.0 362 37.6
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 4.1e-51 205.7 363 36.9
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 5.4e-51 205.3 342 39.2
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 5.4e-51 205.3 232 47.4
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 9.2e-51 204.5 362 38.1
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 1.2e-50 204.1 393 36.1
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.6e-50 203.8 368 36.4
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 3.5e-50 202.6 387 35.4
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 7.8e-50 201.4 369 36.6
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 1.0e-49 201.1 343 41.4
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 1.3e-49 200.7 370 36.8
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 2.3e-49 199.9 362 35.6
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.3e-49 199.9 363 35.5
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.0e-49 199.5 246 51.6
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 1.4e-46 190.7 372 36.0
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 6.8e-46 188.3 248 41.9
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 1.7e-44 183.7 362 34.0
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 4.1e-43 179.1 331 38.1
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 1.2e-42 177.6 376 34.0
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 4.6e-42 175.6 352 34.9
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 3.0e-41 172.9 220 44.1
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 5.1e-41 172.2 340 35.3
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 3.3e-40 169.5 363 32.8
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.6e-39 167.2 352 35.2
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 1.1e-38 164.5 373 31.6
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 2.3e-38 163.3 290 38.3
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 8.6e-33 144.8 220 40.9
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 2.1e-31 140.2 220 40.0
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 8.1e-31 138.3 220 39.5
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 1.1e-30 137.9 220 39.5
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 1.1e-30 137.9 313 33.2
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 1.4e-30 137.5 224 38.4
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.4e-30 137.5 220 40.0
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 6.9e-30 135.2 220 38.2
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 2.9e-28 129.8 224 37.5
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 5.4e-27 125.6 103 62.1
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 9.3e-27 124.8 98 61.2
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 2.7e-26 123.2 222 37.8
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 1.6e-23 114.0 105 58.1
Sc05g0002580 Simmondsia chinensis HOM05D006210 ORTHO05D007510 2.1e-23 113.6 114 55.3
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 6.2e-23 112.1 128 48.4
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.1e-22 111.3 105 58.1
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 2.4e-22 110.2 179 38.5
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 5.3e-22 109.0 110 55.5
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 2.0e-21 107.1 363 26.7
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 2.6e-21 106.7 366 27.3
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 1.7e-20 104.0 103 50.5
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 2.2e-20 103.6 96 52.1
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.2e-20 103.6 118 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 1.5e-16 90.9 220 29.1
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.3e-12 77.8 54 61.1
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 2.5e-08 63.5 214 26.6
Sc05g0002640 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.7e-07 59.7 35 85.7
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 3.1e-06 56.6 55 49.1
Sc05g0002620 Simmondsia chinensis HOM05D006210 ORTHO05D007510 9.0e-06 55.1 35 80.0


User provided reference genes

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