Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 2.3e-136 489.2 299 100.0
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 2.7e-89 332.8 291 60.8
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 3.4e-84 315.8 302 57.3
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 5.0e-83 312.0 313 57.2
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 8.5e-83 311.2 302 58.3
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 1.4e-82 310.5 311 55.6
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 2.5e-82 309.7 307 57.0
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 4.2e-82 308.9 314 55.7
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 7.2e-82 308.1 305 59.7
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.2e-81 307.4 310 56.1
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 1.2e-81 307.4 317 55.2
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 1.2e-81 307.4 312 57.1
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 2.1e-81 306.6 312 57.7
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 2.7e-81 306.2 304 57.2
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 4.7e-81 305.4 317 54.9
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 7.9e-81 304.7 307 55.0
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 1.0e-80 304.3 313 56.5
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 1.8e-80 303.5 302 58.3
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 3.9e-80 302.4 307 56.7
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 1.1e-79 300.8 301 57.5
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 1.5e-79 300.4 317 53.9
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.5e-79 300.4 304 56.9
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 3.3e-79 299.3 307 55.4
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 3.3e-79 299.3 302 56.3
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 3.3e-79 299.3 304 54.9
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 4.4e-79 298.9 302 57.0
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 4.4e-79 298.9 307 54.7
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 4.4e-79 298.9 301 54.2
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 7.4e-79 298.1 297 54.5
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 1.7e-78 297.0 306 54.9
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 2.2e-78 296.6 305 56.4
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 2.8e-78 296.2 314 52.9
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 3.7e-78 295.8 305 55.4
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 3.7e-78 295.8 305 55.4
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 4.8e-78 295.4 307 61.6
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 6.3e-78 295.0 297 57.2
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 8.2e-78 294.7 308 54.9
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 8.2e-78 294.7 307 52.8
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 1.1e-77 294.3 305 55.1
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 1.1e-77 294.3 307 55.0
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 1.4e-77 293.9 307 56.0
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 2.4e-77 293.1 307 54.4
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 3.1e-77 292.7 291 57.0
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 5.3e-77 292.0 301 53.8
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 7.0e-77 291.6 307 53.7
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 1.5e-76 290.4 284 57.7
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 1.5e-76 290.4 306 53.6
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 2.0e-76 290.0 302 61.6
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 4.5e-76 288.9 311 52.4
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 5.9e-76 288.5 308 54.9
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 7.7e-76 288.1 311 53.1
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 7.7e-76 288.1 301 50.5
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 7.7e-76 288.1 305 52.5
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 2.9e-75 286.2 307 53.7
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 3.8e-75 285.8 310 51.9
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 3.8e-75 285.8 305 54.1
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 6.5e-75 285.0 309 54.7
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 8.5e-75 284.6 309 53.7
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 1.1e-74 284.3 309 52.4
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 1.4e-74 283.9 302 55.0
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 2.5e-74 283.1 307 52.4
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 3.2e-74 282.7 311 52.7
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 4.2e-74 282.3 281 58.0
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 7.2e-74 281.6 310 53.2
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 9.4e-74 281.2 307 53.7
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 1.6e-73 280.4 312 51.0
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 3.6e-73 279.3 302 52.3
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 8.0e-73 278.1 280 56.4
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 8.0e-73 278.1 309 52.1
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 2.3e-72 276.6 308 52.6
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 3.9e-72 275.8 303 52.8
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 3.9e-72 275.8 271 59.4
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 1.1e-71 274.2 306 52.9
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 1.1e-71 274.2 306 59.5
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 1.5e-71 273.9 303 55.8
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 2.0e-71 273.5 310 55.5
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 9.7e-71 271.2 308 50.3
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 1.7e-70 270.4 305 52.1
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 1.7e-70 270.4 292 53.8
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-70 270.0 303 51.2
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 4.8e-70 268.9 300 52.0
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 8.2e-70 268.1 292 53.4
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 2.0e-68 263.5 317 50.5
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 2.0e-68 263.5 302 51.3
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 2.6e-68 263.1 306 49.7
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 2.9e-67 259.6 302 53.3
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 2.5e-66 256.5 299 47.2
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 3.7e-62 242.7 307 47.9
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 2.4e-61 240.0 268 50.4
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 2.7e-60 236.5 310 46.8
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 2.7e-60 236.5 301 47.2
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 7.2e-58 228.4 300 44.7
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 9.1e-53 211.5 302 43.7
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 7.0e-45 185.3 122 76.2
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 1.3e-43 181.0 287 39.4
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 9.5e-42 174.9 128 69.5
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 3.1e-40 169.9 130 66.2
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 4.0e-40 169.5 220 48.2
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 2.0e-39 167.2 324 40.1
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 4.9e-38 162.5 296 37.2
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.6e-33 147.5 301 33.9
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 3.7e-30 136.3 281 35.9
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 4.9e-30 136.0 291 32.6
GSVIVG01032953001 Vitis vinifera HOM05D007245 ORTHO05D009049 8.3e-30 135.2 139 58.3
Glyma.16G045802 Glycine max HOM05D007245 ORTHO05D009049 3.3e-26 123.2 136 52.2
Solyc05g008590.4 Solanum lycopersicum HOM05D007245 ORTHO05D009049 1.2e-25 121.3 111 58.6
Zm00001eb113550 Zea mays HOM05D007245 ORTHO05D009049 7.8e-20 102.1 127 44.9
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 5.1e-19 99.4 196 34.2
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.5e-18 97.1 280 29.3
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 8.1e-17 92.0 294 27.9
Psat0s2487g0040 Pisum sativum HOM05D007245 ORTHO05D009049 1.1e-16 91.7 66 68.2
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 1.8e-16 90.9 255 29.0
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 1.5e-15 87.8 264 28.0
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 1.5e-15 87.8 253 28.9
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 3.4e-15 86.7 253 28.9
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 3.4e-15 86.7 253 27.7
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 9.9e-15 85.1 266 28.2
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 9.9e-15 85.1 253 27.7
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.2e-14 84.0 206 32.0
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 8.4e-14 82.0 264 27.3
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 8.4e-14 82.0 262 26.3
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 8.4e-14 82.0 251 25.9
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.1e-13 81.6 275 28.4
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 1.4e-13 81.3 105 41.9
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.9e-13 80.9 257 26.8
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 1.9e-13 80.9 267 27.3
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 3.2e-13 80.1 264 26.5
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 5.4e-13 79.3 253 31.6
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 5.4e-13 79.3 264 28.0
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 9.2e-13 78.6 264 26.9
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 1.2e-12 78.2 264 26.1
Os11g0534100 Oryza sativa ssp. japonica HOM05D007245 ORTHO05D009049 1.2e-12 78.2 138 35.5
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 2.1e-12 77.4 264 23.9
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 2.1e-12 77.4 264 27.3
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 2.7e-12 77.0 251 27.1
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 2.7e-12 77.0 266 27.1
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 3.5e-12 76.6 270 25.9
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 3.5e-12 76.6 265 27.5
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 3.5e-12 76.6 253 25.3
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 6.0e-12 75.9 264 26.1
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 6.0e-12 75.9 260 28.5
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 6.0e-12 75.9 264 25.4
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 7.8e-12 75.5 265 26.0
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 3.0e-11 73.6 266 26.3
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 3.9e-11 73.2 267 27.7
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 5.1e-11 72.8 255 25.9
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 5.1e-11 72.8 95 43.2
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 6.6e-11 72.4 182 28.6
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 1.1e-10 71.6 265 24.5
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 1.1e-10 71.6 264 25.4
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.1e-10 71.6 239 28.5
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 1.5e-10 71.2 267 24.7
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 2.5e-10 70.5 264 25.0
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 3.3e-10 70.1 255 25.5
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 3.3e-10 70.1 180 29.4
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 9.6e-10 68.6 253 24.1
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 1.6e-09 67.8 89 41.6
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 1.6e-09 67.8 255 26.7
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 2.1e-09 67.4 267 25.5
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 2.1e-09 67.4 269 24.9
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 2.8e-09 67.0 264 25.8
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 2.8e-09 67.0 265 25.3
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 6.2e-09 65.9 185 28.1
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 1.1e-08 65.1 264 25.0
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 3.1e-08 63.5 232 26.3
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 4.0e-08 63.2 196 26.0
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.3e-08 62.8 261 25.3
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 5.3e-08 62.8 251 25.5
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 9.0e-08 62.0 256 26.6
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 2.0e-07 60.8 261 24.9
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.0e-07 60.8 261 24.9
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.6e-07 60.5 98 34.7
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.6e-07 60.5 98 34.7
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 2.6e-07 60.5 95 32.6
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 2.6e-07 60.5 267 24.3
AagrBONN_evm.TU.Sc2ySwM_117.445 Anthoceros agrestis HOM05D001193 ORTHO05D001016 1.3e-06 58.2 275 22.9
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 1.7e-06 57.8 95 35.8
arahy.Tifrunner.gnm1.ann1.0E5TT3 Arachis hypogaea HOM05D001193 ORTHO05D001016 3.8e-06 56.6 271 23.6
CiPaw.13G172500 Carya illinoinensis HOM05D001193 ORTHO05D001016 6.4e-06 55.8 299 22.1
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 6.4e-06 55.8 90 34.4
CiPaw.05G058600 Carya illinoinensis HOM05D001193 ORTHO05D001016 8.4e-06 55.5 270 27.8


User provided reference genes

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