Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 2539.2 1298 100.0
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1516.1 1317 62.9
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1507.3 1351 60.3
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1502.6 1368 59.1
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1461.4 1299 60.0
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1453.0 1368 59.1
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1434.5 1299 59.7
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1429.5 1366 57.4
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1428.7 1339 58.0
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1426.8 1360 57.4
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1404.8 1320 58.0
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1403.3 1366 57.5
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1398.3 1349 57.3
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1397.9 1358 56.2
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1393.6 1349 57.3
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1391.7 1359 56.7
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1385.9 1349 56.9
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1379.8 1357 55.9
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1358.2 1349 55.7
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1356.3 1464 53.6
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1356.3 1347 56.1
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1345.1 1441 54.0
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1343.6 1328 55.3
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1342.0 1326 56.3
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1338.2 1344 55.5
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1328.9 1393 54.1
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1325.8 1364 53.2
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1315.8 1339 55.0
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1304.7 1499 50.5
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1286.2 1368 53.7
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1281.5 1367 52.7
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1281.5 1329 53.3
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1279.2 1330 52.6
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1258.4 1361 52.9
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1257.7 1345 53.1
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1250.0 1345 52.0
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1243.8 1368 51.8
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1243.0 1335 52.4
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1241.5 1432 50.7
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1239.2 1368 51.6
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1236.5 1331 52.4
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1236.5 1335 52.1
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1233.8 1418 50.8
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1231.1 1333 51.0
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1226.5 1335 52.0
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1222.6 1360 50.7
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1216.8 1362 51.5
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1216.4 1334 51.7
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1214.9 1363 50.8
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1213.0 1337 51.8
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1213.0 1391 49.5
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1211.8 1353 51.7
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1211.1 1372 51.2
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1208.0 1357 50.6
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1206.4 1361 50.6
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1206.0 1395 50.5
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1203.0 1361 51.1
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1198.7 1341 50.3
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1194.5 1400 50.1
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1192.2 1354 51.6
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1190.6 1346 50.2
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1189.1 1392 50.2
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1188.3 1362 51.0
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1187.2 1324 51.4
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1185.2 1400 49.5
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1182.5 1358 50.4
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1181.0 1357 50.5
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1179.1 1358 50.2
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1179.1 1358 50.2
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1179.1 1358 50.2
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1177.5 1344 50.5
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1177.2 1354 50.4
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1177.2 1390 49.7
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1172.5 1336 49.6
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1171.8 1339 51.2
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1171.8 1350 50.2
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1167.9 1342 51.3
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1160.6 1337 50.5
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1158.3 1416 48.0
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1144.8 1343 49.1
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1141.3 1031 59.8
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1140.6 1298 50.8
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1134.8 1409 47.1
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1124.8 1349 49.3
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1121.7 1351 49.3
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1111.3 1389 49.1
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1096.3 1331 48.0
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1089.3 1251 49.2
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1080.1 1316 48.6
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 8.0e-311 1070.8 1328 48.1
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 1.3e-310 1070.1 1312 46.3
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 6.3e-292 1008.1 1092 51.7
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 7.7e-282 974.5 1332 44.2
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 3.0e-265 919.5 1288 44.6
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 2.5e-248 863.2 916 53.7
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 4.9e-220 769.2 846 51.3
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.1e-219 768.1 911 49.2
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 3.1e-206 723.4 682 57.8
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.6e-202 711.1 709 56.1
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 3.4e-197 693.3 735 53.6
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 4.4e-192 676.4 639 58.1
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 4.8e-191 672.9 804 50.0
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 3.6e-178 630.2 1275 35.7
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 4.7e-178 629.8 667 53.5
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 1.4e-177 628.2 912 45.1
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.8e-175 620.5 480 63.8
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.2e-172 610.9 798 45.2
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 1.1e-158 565.5 599 50.6
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.0e-156 558.9 1056 36.4
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.8e-153 548.1 664 46.7
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 9.5e-147 525.8 1325 30.6
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.9e-139 501.5 358 69.6
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 8.1e-138 496.1 1136 33.5
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 4.6e-133 480.3 506 51.8
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 5.1e-132 476.9 1119 31.5
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.9e-131 474.9 386 62.7
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 7.8e-125 453.0 358 62.6
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.3e-118 429.5 417 52.5
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.3e-102 376.3 677 37.1
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.8e-87 327.8 439 41.0
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.4e-86 325.9 244 66.4
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.6e-85 322.4 326 51.2
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 3.7e-74 284.6 351 46.4
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 8.8e-68 263.5 308 48.1
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 6.1e-61 240.7 366 44.3
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 5.2e-52 211.1 206 52.4
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.1e-49 201.4 237 52.3
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.6e-45 189.5 262 42.0
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 2.2e-42 179.1 267 40.8
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 5.9e-40 171.0 121 68.6
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.0e-36 160.2 85 94.1
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 1.4e-36 159.8 291 40.9
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.2e-34 152.5 204 45.6
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 7.8e-32 144.1 519 26.2
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.5e-27 129.8 405 29.9
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 4.9e-26 124.8 380 25.8
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 3.5e-24 118.6 116 51.7
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 1.3e-23 116.7 211 37.0
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 6.6e-23 114.4 90 61.1
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.1e-22 113.6 396 25.3
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 4.3e-22 111.7 407 26.8
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.8e-21 109.0 166 41.0
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.1e-13 82.8 283 27.2
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.7e-10 73.2 68 51.5
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.6e-08 65.1 46 69.6
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 1.7e-07 63.2 66 50.0


User provided reference genes

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