Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.7e-260 902.1 458 100.0
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.8e-194 682.2 458 76.0
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 4.5e-192 674.9 458 75.1
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 5.8e-192 674.5 458 75.5
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 5.8e-192 674.5 458 75.5
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 9.3e-190 667.2 458 74.5
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.2e-189 666.8 459 74.7
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 6.0e-189 664.5 454 75.3
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.3e-187 658.7 454 75.1
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 5.7e-187 657.9 452 73.9
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 8.2e-186 654.1 458 74.0
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 2.4e-185 652.5 474 71.9
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 8.5e-183 644.0 458 72.3
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 5.5e-182 641.3 551 63.3
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.1e-181 639.4 458 72.9
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 2.1e-181 639.4 461 70.7
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 6.1e-181 637.9 458 71.4
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.3e-180 636.7 461 70.3
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.3e-179 632.1 458 71.4
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 5.7e-179 631.3 456 70.4
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 5.7e-179 631.3 458 71.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.6e-178 629.8 458 71.2
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 4.8e-178 628.2 458 71.0
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 4.8e-178 628.2 432 74.3
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 4.1e-177 625.2 456 68.9
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.5e-176 621.7 450 70.2
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.0e-175 620.5 481 67.2
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 2.9e-175 619.0 456 69.7
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.9e-174 616.3 458 69.2
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.2e-173 613.6 459 68.8
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 2.7e-173 612.5 453 69.3
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 4.6e-173 611.7 451 69.6
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 6.1e-173 611.3 465 66.2
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 6.1e-173 611.3 452 69.5
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 3.9e-172 608.6 449 67.0
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 5.1e-172 608.2 420 75.7
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.5e-171 606.7 451 69.0
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.5e-171 606.7 442 67.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.0e-171 606.3 441 68.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.6e-171 605.9 433 68.6
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.7e-170 603.2 458 67.7
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 3.7e-170 602.1 459 68.2
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.8e-170 601.7 456 65.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 6.3e-170 601.3 454 69.8
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.2e-170 600.9 456 69.1
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 8.2e-170 600.9 451 67.0
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.4e-169 600.1 457 66.7
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.8e-169 599.7 457 66.7
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 5.3e-169 598.2 463 67.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 9.1e-169 597.4 467 65.5
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 1.0e-167 594.0 451 67.6
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.0e-167 594.0 451 67.6
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.7e-167 593.2 446 68.2
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 2.9e-167 592.4 480 65.6
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.8e-167 592.0 458 68.8
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 6.5e-167 591.3 454 67.4
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 6.5e-167 591.3 454 67.2
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 8.5e-167 590.9 480 65.4
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 8.5e-167 590.9 444 67.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.1e-166 590.5 458 65.9
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.5e-166 589.3 454 64.1
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 7.2e-166 587.8 456 67.5
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 9.4e-166 587.4 454 67.4
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.6e-165 586.6 456 64.9
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 6.1e-165 584.7 451 65.2
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 6.1e-165 584.7 451 65.4
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 6.1e-165 584.7 451 65.2
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 6.1e-165 584.7 451 65.4
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-164 583.6 451 65.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.4e-164 583.6 451 65.0
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.4e-164 583.6 450 65.3
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.8e-164 583.2 451 65.2
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 3.0e-164 582.4 446 68.2
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.9e-164 582.0 452 67.0
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 3.9e-164 582.0 458 65.7
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 5.2e-164 581.6 474 63.9
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 5.2e-164 581.6 451 66.3
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 6.7e-164 581.3 457 67.0
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 6.7e-164 581.3 456 64.0
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 6.7e-164 581.3 390 74.6
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 8.8e-164 580.9 458 65.5
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.1e-163 580.5 451 64.5
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-163 579.7 454 66.3
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.6e-163 579.3 451 64.3
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 4.4e-163 578.6 450 65.3
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 4.4e-163 578.6 450 65.3
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 9.7e-163 577.4 462 64.7
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-162 576.6 454 66.1
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 3.7e-162 575.5 455 66.2
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 3.7e-162 575.5 451 65.9
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 8.2e-162 574.3 450 66.2
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.1e-161 573.9 455 65.9
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.8e-161 573.2 446 66.8
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.8e-161 573.2 459 65.4
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 2.4e-161 572.8 400 71.2
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 9.1e-161 570.9 483 61.7
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 9.1e-161 570.9 477 62.5
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.2e-160 570.5 456 66.0
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.6e-160 570.1 459 65.6
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 3.5e-160 568.9 488 62.5
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.3e-159 567.0 453 64.9
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 5.0e-159 565.1 416 67.5
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.0e-156 555.4 457 62.8
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.2e-155 553.9 450 63.3
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 9.7e-155 550.8 472 62.3
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 3.1e-153 545.8 385 69.6
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.7e-151 540.0 400 68.8
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 3.2e-150 535.8 466 60.9
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.6e-149 533.5 478 58.2
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.7e-147 525.0 409 67.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.3e-146 523.9 431 61.9
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 3.1e-145 519.2 442 60.4
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.3e-143 513.8 448 60.5
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.2e-142 508.8 388 68.0
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 3.6e-141 505.8 448 59.4
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 4.4e-139 498.8 446 58.3
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 3.3e-134 482.6 447 56.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.2e-133 480.7 453 55.0
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.2e-128 464.2 350 67.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.6e-125 453.8 443 51.7
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.1e-125 453.4 389 57.8
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.1e-121 441.0 450 52.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.4e-121 438.7 459 50.3
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 2.0e-120 436.8 459 50.3
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 5.0e-119 432.2 455 51.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 7.3e-118 428.3 455 52.7
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 7.3e-118 428.3 279 74.2
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.6e-110 402.1 433 54.0
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.9e-106 389.8 458 48.5
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 4.6e-104 382.5 320 64.4
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.9e-98 363.2 399 51.9
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-92 344.4 269 65.1
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.8e-92 344.0 262 65.3
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 9.0e-92 341.7 292 62.3
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.6e-86 321.6 460 43.0
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 3.9e-71 273.1 187 71.7
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 1.1e-68 265.0 314 50.6
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.7e-64 250.4 446 38.3
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.8e-61 240.4 158 75.9
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.8e-55 221.1 129 81.4
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.0e-51 207.6 158 66.5
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 6.5e-50 202.6 195 53.3
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 2.3e-47 194.1 175 57.7
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.7e-37 161.4 125 64.0
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 4.1e-36 156.8 121 67.8
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.2e-33 147.1 120 69.2
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.8e-31 141.4 94 74.5
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.0e-31 140.2 134 60.4
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 2.4e-28 131.0 111 64.0
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.0e-26 125.6 77 79.2
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.3e-23 114.4 99 56.6
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 7.3e-17 92.8 81 54.3
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.4e-15 88.6 61 70.5
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 2.9e-13 80.9 56 71.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 7.0e-12 76.3 42 76.2
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.9e-09 68.2 41 78.0
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 4.3e-09 67.0 88 45.5


User provided reference genes

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