Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 1.5e-247 859.0 404 100.0
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 6.2e-230 800.4 402 92.3
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 3.8e-227 791.2 402 90.8
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 5.1e-224 780.8 401 90.5
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 6.7e-224 780.4 402 90.8
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 3.3e-223 778.1 402 89.3
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 1.1e-221 773.1 401 90.3
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 4.0e-221 771.2 400 90.0
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 5.3e-221 770.8 396 90.4
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.2e-220 769.6 417 87.5
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 3.4e-220 768.1 401 88.5
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 4.5e-220 767.7 433 84.8
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 5.8e-220 767.3 402 89.8
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 1.7e-219 765.8 402 89.6
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 2.2e-219 765.4 401 88.8
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 2.9e-219 765.0 403 87.1
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 2.9e-219 765.0 400 88.2
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 6.5e-219 763.8 401 89.5
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 8.4e-219 763.5 401 88.8
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 8.4e-219 763.5 402 89.8
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.4e-218 762.7 401 88.5
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.4e-218 762.7 401 88.5
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.9e-218 762.3 401 88.8
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 1.6e-217 759.2 403 87.8
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 2.1e-217 758.8 403 88.1
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 2.7e-217 758.4 401 89.8
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 2.7e-217 758.4 400 87.8
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 3.5e-217 758.1 401 88.8
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 3.5e-217 758.1 403 87.6
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 6.0e-217 757.3 401 88.0
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 1.3e-216 756.1 403 87.6
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 1.8e-216 755.7 400 88.2
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 3.9e-216 754.6 403 87.3
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 1.5e-215 752.7 404 87.4
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 1.9e-215 752.3 403 86.6
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 4.3e-215 751.1 403 86.8
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 4.3e-215 751.1 408 86.5
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 4.3e-215 751.1 390 90.0
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 5.7e-215 750.7 401 87.8
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 1.3e-214 749.6 413 86.7
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 1.3e-214 749.6 403 87.1
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 2.1e-214 748.8 401 86.5
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 2.1e-214 748.8 403 86.4
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 2.1e-214 748.8 401 87.3
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 3.7e-214 748.0 409 87.5
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 8.2e-214 746.9 403 87.1
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 8.2e-214 746.9 402 87.3
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 8.2e-214 746.9 408 86.3
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 8.2e-214 746.9 403 86.6
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 1.4e-213 746.1 404 85.1
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 2.4e-213 745.3 404 86.4
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 9.0e-213 743.4 401 85.5
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 9.0e-213 743.4 401 85.5
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 9.0e-213 743.4 401 86.3
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 1.5e-212 742.7 402 86.1
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 3.4e-212 741.5 394 89.1
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 4.5e-212 741.1 405 84.7
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 1.7e-211 739.2 388 89.4
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 2.9e-211 738.4 390 87.4
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 5.0e-211 737.6 401 87.0
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 2.5e-210 735.3 413 85.2
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 3.2e-210 734.9 395 86.3
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 4.2e-210 734.6 390 88.5
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 5.5e-210 734.2 391 87.5
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 7.2e-210 733.8 432 81.5
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 7.2e-210 733.8 401 86.8
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 4.6e-209 731.1 401 84.8
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 3.9e-208 728.0 404 83.2
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 8.7e-208 726.9 403 85.6
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 4.3e-207 724.5 404 82.2
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 4.3e-207 724.5 404 82.7
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 1.3e-206 723.0 404 82.2
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 1.3e-206 723.0 404 81.4
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.2e-206 722.2 403 84.9
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 3.7e-206 721.5 399 86.0
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 1.1e-205 719.9 415 82.2
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 4.1e-205 718.0 403 83.4
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 5.3e-205 717.6 399 84.2
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 2.0e-204 715.7 391 86.2
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 2.2e-203 712.2 401 82.5
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 8.5e-203 710.3 404 82.9
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.1e-202 709.9 403 81.6
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 5.5e-202 707.6 400 83.0
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 7.9e-201 703.7 397 82.4
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 7.4e-199 697.2 364 88.5
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 1.3e-198 696.4 418 80.4
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 2.8e-198 695.3 385 82.9
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 2.8e-198 695.3 385 82.9
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 1.2e-196 689.9 387 82.4
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 1.2e-196 689.9 404 78.2
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.9e-196 687.6 387 82.4
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 4.2e-194 681.4 402 80.3
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 5.2e-192 674.5 408 77.9
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.2e-192 674.5 380 82.6
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 8.8e-192 673.7 401 80.3
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.5e-191 672.9 357 87.1
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 4.4e-191 671.4 385 82.1
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 5.3e-189 664.5 399 78.9
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 1.3e-187 659.8 386 78.5
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 2.9e-187 658.7 386 78.2
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 1.5e-186 656.4 386 78.0
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 7.2e-186 654.1 401 79.3
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 1.6e-185 652.9 409 78.2
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 1.8e-184 649.4 375 78.9
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 2.8e-182 642.1 401 78.1
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 3.7e-182 641.7 341 86.8
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 2.0e-175 619.4 397 75.6
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 2.2e-174 615.9 356 78.9
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 5.4e-173 611.3 328 85.4
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 2.9e-171 605.5 393 71.0
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 3.0e-168 595.5 398 70.4
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 6.8e-168 594.3 394 69.5
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 2.0e-167 592.8 394 69.5
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 1.6e-164 583.2 305 89.5
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 3.0e-160 568.9 306 87.9
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.4e-157 560.1 306 86.3
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 2.5e-154 549.3 345 74.2
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.8e-152 543.1 400 64.0
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.2e-148 530.4 393 63.1
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 1.1e-122 444.1 242 86.0
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 6.7e-107 391.7 266 66.9
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 1.6e-105 387.1 207 89.9
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 1.1e-93 347.8 186 84.4
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.9e-90 337.0 371 53.1
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.4e-88 330.9 222 73.4
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 7.7e-87 325.1 171 85.4
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 1.4e-83 314.3 163 87.7
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.2e-79 301.2 434 39.9
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 2.0e-79 300.4 224 62.5
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 4.1e-72 276.2 146 84.9
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 2.7e-60 236.9 144 77.1
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 3.6e-60 236.5 173 64.7
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 2.9e-46 190.3 189 54.5
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.7e-31 140.6 72 87.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 2.3e-22 110.9 201 39.8
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 2.4e-16 90.9 269 27.9
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 9.3e-08 62.4 34 85.3


User provided reference genes

Program Settings