Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 4440.2 2423 100.0
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 2145.9 2480 57.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 2025.4 2420 54.8
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1989.5 2363 55.3
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1945.2 2540 52.1
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1937.9 2535 52.8
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1926.4 2512 53.3
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1917.9 2518 52.8
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1879.0 2517 52.0
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1874.8 2514 52.2
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1839.7 2539 50.4
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1837.4 2509 51.2
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1834.7 2516 51.6
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1825.4 2512 51.4
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1824.3 2551 49.6
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1793.9 2539 49.2
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1786.5 2559 50.8
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1784.6 2513 49.7
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1782.7 2490 50.7
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1782.3 2517 51.2
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1770.0 2511 49.7
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1767.7 2569 50.4
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1766.9 2573 50.6
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1756.9 2571 50.2
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1754.2 2517 50.5
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1748.8 2510 49.4
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1746.9 2533 50.5
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1737.2 2508 49.4
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1736.1 2507 50.1
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1730.7 2521 50.5
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1729.9 2497 50.7
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1720.7 2510 49.1
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1715.3 2517 49.9
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1709.1 2468 49.6
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1705.3 2511 49.4
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1705.3 2512 49.3
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1699.9 2561 49.1
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1697.9 2512 48.7
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1691.0 2190 53.0
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1681.8 2515 49.8
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1673.3 2511 48.7
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1656.7 2525 47.7
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1649.0 2509 49.1
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1634.8 2301 51.2
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1626.3 2498 48.1
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1622.1 2544 47.8
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1619.4 2502 47.2
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1616.3 2534 48.3
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1614.7 2476 47.6
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1605.9 2531 48.2
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1604.3 2512 46.8
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1591.6 2506 46.6
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1586.2 2533 47.0
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1577.0 2636 45.5
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1569.7 2489 47.3
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1569.7 2477 48.2
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1569.3 2498 47.5
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1568.5 2491 47.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1565.8 2496 47.9
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1561.2 2497 47.9
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1559.7 2509 47.1
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1553.9 2496 47.4
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1546.6 2496 47.1
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1540.0 2021 53.4
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1527.7 2489 47.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1520.8 2384 47.2
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1496.9 2518 45.5
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1488.0 2378 46.9
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1484.9 2581 43.8
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1480.3 2526 45.3
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1463.4 2492 46.0
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1456.0 2565 44.8
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1445.6 2503 47.3
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1442.6 2498 45.5
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1432.5 2489 45.2
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1431.0 2497 45.3
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1414.1 2511 43.4
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1399.8 2507 45.0
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1376.7 2499 44.5
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1373.6 1881 52.4
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1360.1 2509 44.0
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1339.7 2492 44.3
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1336.2 2526 43.5
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1309.7 2497 43.5
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1215.7 2515 41.0
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1203.7 2531 39.7
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1195.6 2627 38.4
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1193.7 2477 41.9
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1191.8 2635 39.4
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1185.6 2486 42.4
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1176.0 2422 42.4
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1173.7 2467 41.9
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1157.5 2482 39.6
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1129.8 2433 41.5
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1122.8 2527 38.3
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1120.9 2472 38.7
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1096.6 2606 38.6
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 1.8e-303 1047.3 2390 38.8
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 9.7e-286 988.4 2378 39.4
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 7.9e-280 968.8 1746 42.3
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 6.9e-276 955.7 2506 38.1
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 3.3e-270 936.8 1706 45.1
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.6e-267 927.9 1286 49.3
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 8.0e-248 862.4 1078 54.5
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 5.4e-244 849.7 962 54.3
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 1.7e-234 818.1 2539 36.7
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 8.9e-231 805.8 2419 36.8
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 5.4e-220 770.0 2406 37.1
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.6e-219 768.5 2403 37.0
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 4.3e-217 760.4 2423 36.9
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 4.3e-217 760.4 2423 36.9
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 5.2e-215 753.4 2456 36.5
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 3.4e-214 750.7 2735 33.8
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 6.6e-202 709.9 1038 51.6
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.8e-182 643.7 942 51.2
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.7e-179 634.8 971 47.3
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.4e-174 617.8 704 55.4
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.5e-166 592.4 2526 31.3
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 3.9e-154 551.2 1951 35.1
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 3.6e-139 501.5 1821 31.1
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 5.0e-125 454.5 573 53.2
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 8.3e-120 437.2 502 52.6
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.5e-108 399.8 435 52.6
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.6e-107 396.4 1327 35.6
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.1e-106 393.7 757 39.2
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 6.4e-104 384.4 922 37.2
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.8e-98 366.3 1756 31.6
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.8e-88 332.0 1224 30.0
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.0e-85 323.9 650 42.2
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.5e-73 283.5 2834 27.7
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.3e-72 280.4 954 32.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.1e-60 240.7 184 64.7
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.9e-60 240.0 2561 28.8
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.8e-59 236.1 1034 33.7
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.2e-49 204.1 249 50.2
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 1.0e-48 201.1 249 49.8
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 5.0e-48 198.7 559 33.6
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 8.5e-48 198.0 2579 26.6
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 3.9e-45 189.1 547 33.1
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 3.9e-45 189.1 450 36.9
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 1.1e-39 171.0 506 34.4
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.3e-37 163.3 2794 25.8
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 2.3e-29 136.7 1298 25.9
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.3e-27 131.0 407 31.9
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.7e-27 129.4 73 76.7
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 8.2e-27 128.3 301 35.2
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.1e-26 125.9 186 47.8
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 4.1e-26 125.9 220 42.7
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.3e-21 110.2 250 36.4
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 9.8e-20 104.8 228 39.9
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 4.1e-18 99.4 312 33.7
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 4.0e-13 82.8 77 55.8
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 1.5e-12 80.9 72 58.3
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 4.9e-11 75.9 71 59.2
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 4.5e-09 69.3 227 30.8
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 2.3e-08 67.0 55 58.2
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 2.3e-08 67.0 132 41.7
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 1.1e-07 64.7 95 45.3
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 8.0e-06 58.5 2154 25.2


User provided reference genes

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