Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 3.8e-207 724.5 356 100.0
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 5.7e-187 657.5 358 88.8
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 1.8e-185 652.5 358 88.3
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 3.2e-185 651.7 358 88.5
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.7e-184 648.7 357 88.0
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 3.5e-184 648.3 358 88.3
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 1.0e-183 646.7 353 88.7
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 2.9e-183 645.2 357 88.0
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 3.9e-183 644.8 344 90.7
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 8.6e-183 643.7 353 88.4
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 8.6e-183 643.7 353 88.1
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 3.3e-182 641.7 358 87.4
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 7.3e-182 640.6 357 88.0
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 1.2e-181 639.8 349 89.1
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 1.0e-180 636.7 356 87.1
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.8e-180 634.0 353 87.0
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 6.8e-180 634.0 353 87.0
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.5e-179 632.9 353 86.7
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 2.0e-179 632.5 358 86.0
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 2.0e-179 632.5 367 84.7
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 2.6e-179 632.1 361 85.9
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 2.6e-179 632.1 360 86.4
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 4.4e-179 631.3 356 85.1
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 9.8e-179 630.2 355 85.1
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 2.2e-178 629.0 355 84.8
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 2.9e-178 628.6 352 85.8
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 2.9e-178 628.6 357 84.3
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 4.9e-178 627.9 347 86.5
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 4.9e-178 627.9 347 87.0
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 6.4e-178 627.5 357 85.2
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 8.3e-178 627.1 344 88.4
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 1.1e-177 626.7 357 84.3
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.4e-177 626.3 346 86.7
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 1.4e-177 626.3 358 84.9
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 1.9e-177 625.9 357 84.9
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 2.4e-177 625.5 359 84.7
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 2.4e-177 625.5 344 88.1
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 5.4e-177 624.4 358 83.5
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.6e-176 622.9 346 86.4
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 2.0e-176 622.5 347 85.6
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.7e-175 619.4 356 84.3
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 8.6e-175 617.1 343 87.5
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 9.5e-174 613.6 372 80.1
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 8.0e-173 610.5 345 86.7
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 8.0e-173 610.5 415 75.7
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 1.4e-172 609.8 382 78.0
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 1.8e-172 609.4 395 78.7
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 4.0e-172 608.2 356 82.9
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 8.9e-172 607.1 357 83.5
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.2e-171 606.7 364 80.8
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.5e-171 606.3 343 84.3
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.5e-171 606.3 343 84.3
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.0e-171 605.9 357 83.2
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 2.6e-171 605.5 345 83.8
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 3.4e-171 605.1 333 88.9
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 3.4e-171 605.1 325 88.3
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 7.5e-171 604.0 351 83.5
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 9.8e-171 603.6 335 87.2
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 2.2e-170 602.4 363 81.3
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.2e-170 602.4 349 83.1
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 2.9e-170 602.1 393 76.3
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 1.4e-169 599.7 354 79.9
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 1.4e-169 599.7 388 77.3
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 1.6e-168 596.3 350 82.6
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 6.0e-168 594.3 359 81.6
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 1.2e-165 586.6 359 80.2
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 2.8e-165 585.5 378 77.0
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 3.6e-165 585.1 359 79.7
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 4.7e-165 584.7 351 82.3
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.1e-164 583.6 361 80.9
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 7.6e-163 577.4 373 79.1
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 1.4e-161 573.2 349 80.8
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 9.2e-161 570.5 326 84.0
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.2e-160 570.1 416 71.2
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 7.8e-160 567.4 347 81.0
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 7.8e-160 567.4 322 85.1
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 4.7e-157 558.1 357 78.2
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.2e-155 553.5 318 85.2
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 1.5e-155 553.1 312 84.9
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.4e-153 546.6 435 66.4
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 7.1e-153 544.3 331 77.3
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 2.1e-152 542.7 334 75.4
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 4.6e-152 541.6 356 77.0
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.7e-151 539.7 370 73.2
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 1.1e-150 537.0 334 74.9
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.5e-150 536.6 330 81.5
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 9.6e-150 533.9 359 75.2
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.4e-145 520.0 379 70.7
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 9.3e-145 517.3 349 75.9
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 7.9e-144 514.2 354 71.2
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.0e-143 513.8 371 71.2
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 4.3e-142 508.4 314 73.6
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 1.2e-139 500.4 348 72.4
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 4.5e-139 498.4 361 70.6
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 3.5e-136 488.8 362 69.6
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 3.9e-135 485.3 305 74.1
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.0e-130 470.7 358 68.2
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 1.7e-130 469.9 292 79.1
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 3.8e-130 468.8 289 78.5
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 2.2e-122 443.0 324 64.5
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 3.2e-121 439.1 314 70.1
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 7.9e-120 434.5 238 87.4
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 1.1e-118 430.6 347 62.0
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.8e-117 426.0 321 68.5
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 8.2e-117 424.5 231 88.3
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 2.2e-114 416.4 220 90.0
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 2.2e-114 416.4 220 90.0
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 2.9e-114 416.0 231 87.4
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.9e-114 416.0 239 84.5
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.4e-113 413.7 360 62.2
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 8.8e-111 404.4 213 90.1
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 7.4e-110 401.4 231 85.7
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.2e-109 399.8 358 62.8
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.7e-106 390.2 226 85.0
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.1e-102 377.5 232 81.9
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.4e-100 370.5 422 48.1
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 2.7e-83 313.2 235 69.8
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 8.0e-72 275.0 202 70.3
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 4.4e-62 242.7 190 66.3
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 1.7e-58 230.7 270 49.6
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 6.6e-58 228.8 354 42.4
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 4.4e-54 216.1 129 79.8
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 1.4e-47 194.5 114 80.7
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 3.1e-47 193.4 115 80.0
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 9.9e-46 188.3 122 73.0
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 4.9e-37 159.5 102 77.5
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 6.4e-37 159.1 83 89.2
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 7.1e-36 155.6 94 77.7
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.0e-31 139.8 121 62.0
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.1e-28 131.7 77 85.7
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.0e-26 125.2 95 66.3
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.9e-23 112.5 77 70.1
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 4.2e-20 103.2 68 72.1
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 2.3e-18 97.4 73 67.1
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.5e-17 94.7 57 75.4
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.1e-15 88.6 60 70.0
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 1.4e-12 78.2 77 54.5
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 1.4e-12 78.2 54 72.2
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 3.5e-11 73.6 81 48.1
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.5e-09 68.2 34 79.4
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 4.3e-09 66.6 31 90.3
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 7.4e-09 65.9 44 70.5
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 1.4e-07 61.6 38 76.3
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 1.4e-07 61.6 38 76.3
PRCOL_00007051 Prasinoderma coloniale HOM05D002604 ORTHO05D003070 9.0e-07 58.9 188 25.5


User provided reference genes

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