Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-126 456.4 216 100.0
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.6e-62 241.9 218 56.0
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-60 236.5 218 55.0
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-59 233.8 212 51.4
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-56 222.6 211 52.6
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.1e-53 211.8 210 49.0
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.5e-52 207.6 211 46.9
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-48 196.1 212 46.7
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-42 176.8 202 45.5
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-40 170.6 214 43.0
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 2.9e-40 169.5 220 43.6
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 8.4e-40 167.9 217 41.0
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.4e-39 167.2 217 41.0
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-39 166.8 161 52.2
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.4e-39 166.4 216 41.7
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.5e-38 162.5 216 41.7
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 6.0e-38 161.8 216 40.7
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.7e-37 160.2 217 41.9
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.5e-36 156.4 216 41.2
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 2.5e-36 156.4 218 42.7
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-36 156.4 201 43.8
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 3.3e-36 156.0 217 38.7
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.3e-36 155.6 214 41.6
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-35 153.3 201 40.3
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 6.2e-35 151.8 217 40.6
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.3e-34 148.7 163 46.6
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 1.2e-33 147.5 215 41.9
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.5e-33 147.1 216 41.7
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.0e-33 146.7 217 39.6
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 2.0e-33 146.7 216 40.3
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 9.9e-33 144.4 218 39.9
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-32 144.1 216 38.9
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.2e-32 143.3 214 38.8
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-31 140.6 163 46.0
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-31 139.8 212 39.6
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 7.1e-31 138.3 214 38.3
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.2e-30 137.5 212 38.7
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.2e-30 137.5 212 38.7
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 1.0e-29 134.4 169 45.0
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 1.8e-29 133.7 218 36.7
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 3.0e-29 132.9 211 35.1
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 3.0e-29 132.9 217 35.0
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.7e-29 131.3 217 36.9
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 6.2e-27 125.2 199 41.2
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-26 124.0 217 36.4
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.4e-26 124.0 207 36.2
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 6.9e-26 121.7 147 47.6
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 6.9e-26 121.7 147 47.6
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 9.0e-26 121.3 222 35.1
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.5e-25 120.6 201 35.8
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.4e-25 119.4 160 40.0
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 5.8e-25 118.6 145 44.1
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.9e-25 117.9 201 35.3
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 8.4e-24 114.8 214 33.2
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 8.4e-24 114.8 170 39.4
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.1e-23 114.4 196 39.8
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 3.2e-23 112.8 223 34.1
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 4.2e-23 112.5 201 32.8
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 4.2e-23 112.5 215 33.5
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.6e-22 110.5 243 32.1
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.1e-22 110.2 194 36.6
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 2.7e-22 109.8 214 30.4
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.5e-22 109.4 198 38.9
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 4.6e-22 109.0 215 30.7
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 4.6e-22 109.0 215 30.7
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 6.0e-22 108.6 208 37.0
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.0e-22 108.6 193 37.3
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 7.9e-22 108.2 201 32.8
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 7.9e-22 108.2 215 30.7
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 1.3e-21 107.5 214 33.2
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.3e-21 106.7 201 31.8
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.0e-21 106.3 212 34.0
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.0e-21 106.3 165 33.9
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.0e-21 106.3 145 40.0
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 6.7e-21 105.1 185 35.1
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 6.7e-21 105.1 216 31.9
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 8.7e-21 104.8 222 32.9
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-20 104.4 193 36.3
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.9e-20 103.6 212 32.5
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 2.5e-20 103.2 165 38.8
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 2.5e-20 103.2 192 35.4
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.5e-20 103.2 138 38.4
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 3.3e-20 102.8 139 38.1
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 4.3e-20 102.4 139 38.8
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 5.6e-20 102.1 174 34.5
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 7.4e-20 101.7 194 34.5
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 1.3e-19 100.9 180 36.7
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 1.6e-19 100.5 206 33.5
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 2.8e-19 99.8 165 37.6
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.8e-19 99.0 149 38.9
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.8e-19 99.0 149 38.9
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 6.2e-19 98.6 139 36.0
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 8.1e-19 98.2 187 34.8
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-18 97.4 110 50.9
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.4e-18 96.7 143 39.9
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 4.0e-18 95.9 218 31.7
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 6.9e-18 95.1 128 42.2
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 9.0e-18 94.7 130 40.0
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 9.0e-18 94.7 202 32.7
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 1.2e-17 94.4 219 32.4
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-17 93.6 128 41.4
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-17 93.6 128 41.4
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.4e-17 92.8 145 35.2
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 3.4e-17 92.8 128 41.4
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 3.4e-17 92.8 128 41.4
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 2.9e-16 89.7 128 39.8
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 3.8e-16 89.4 199 32.2
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 6.5e-16 88.6 199 32.2
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 8.4e-16 88.2 190 28.9
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 1.4e-15 87.4 219 30.1
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.5e-15 86.7 164 36.0
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 2.7e-14 83.2 188 31.9
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 4.6e-14 82.4 181 30.4
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 6.0e-14 82.0 181 30.4
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 6.0e-14 82.0 186 31.7
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.3e-13 80.9 100 45.0
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 1.3e-13 80.9 218 30.7
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.7e-13 78.6 218 29.8
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 6.7e-13 78.6 166 31.3
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 1.1e-12 77.8 124 34.7
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.5e-12 76.6 102 38.2
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.5e-12 76.6 97 41.2
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 3.3e-12 76.3 113 36.3
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.3e-12 76.3 117 40.2
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 3.3e-12 76.3 166 30.1
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 5.7e-12 75.5 175 29.1
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 7.4e-12 75.1 175 29.1
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 9.6e-12 74.7 146 35.6
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.1e-11 73.6 178 29.2
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.7e-11 72.8 102 36.3
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 8.2e-11 71.6 117 37.6
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.2e-11 71.6 80 51.2
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.1e-10 71.2 145 36.6
Sed0001119 Sechium edule HOM05D004865 ORTHO05D005949 1.1e-10 71.2 150 33.3
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.4e-10 70.9 92 43.5
EL10Ac3g05478 Beta vulgaris HOM05D009434 ORTHO05D011504 4.1e-10 69.3 148 30.4
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-10 69.3 219 29.7
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.3e-10 68.9 146 28.1
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 5.9e-09 65.5 133 34.6
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 5.9e-09 65.5 204 27.5
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 3.8e-08 62.8 60 45.0
Sed0020964 Sechium edule HOM05D004865 ORTHO05D005949 1.9e-07 60.5 109 34.9
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 5.5e-07 58.9 196 27.0
AUR62001815 Chenopodium quinoa HOM05D009434 ORTHO05D031688 1.6e-06 57.4 119 33.6
Duzib128G1368 Durio zibethinus HOM05D009645 ORTHO05D035099 1.6e-06 57.4 130 30.0


User provided reference genes

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