Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.3e-103 379.8 200 100.0
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.1e-101 372.5 200 98.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 2.1e-77 292.7 200 74.5
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.7e-76 287.7 190 77.9
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 2.6e-75 285.8 200 71.0
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 4.5e-72 275.0 200 71.0
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 4.7e-69 265.0 200 67.5
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.0e-68 263.8 200 66.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 2.6e-67 259.2 205 65.9
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 3.3e-67 258.8 198 66.2
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.2e-66 256.1 198 64.1
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 4.5e-64 248.4 198 65.2
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 4.5e-64 248.4 200 61.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 5.9e-64 248.1 200 62.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 5.9e-64 248.1 200 62.0
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 2.9e-63 245.7 198 65.7
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 3.8e-63 245.4 198 64.1
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 8.5e-63 244.2 198 63.6
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 2.5e-62 242.7 198 63.1
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 4.2e-62 241.9 200 61.0
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 5.5e-62 241.5 198 62.6
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 4.7e-61 238.4 199 64.8
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 6.1e-61 238.0 185 65.9
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 4.0e-60 235.3 199 64.3
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 4.0e-60 235.3 198 62.1
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 4.0e-60 235.3 198 58.6
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 6.7e-60 234.6 198 62.1
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 1.2e-59 233.8 198 59.6
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.5e-59 233.4 200 61.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.3e-58 230.3 199 59.8
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.3e-58 230.3 200 59.0
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 2.2e-58 229.6 199 59.8
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.8e-58 229.2 199 59.8
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 3.7e-58 228.8 198 58.1
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 4.8e-58 228.4 198 57.6
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 1.8e-57 226.5 198 60.1
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 4.1e-57 225.3 204 57.4
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 5.3e-57 224.9 199 60.8
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 7.7e-56 221.1 204 56.4
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.3e-55 220.3 198 56.1
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 1.7e-55 219.9 198 58.6
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.1e-54 217.2 200 56.0
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 1.5e-54 216.9 198 57.1
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.5e-54 214.9 186 60.2
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.2e-54 214.5 185 60.0
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 9.4e-54 214.2 185 57.8
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 1.6e-53 213.4 198 55.1
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.7e-53 212.6 185 57.8
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 4.7e-53 211.8 198 56.6
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.0e-52 210.7 198 54.0
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 1.8e-52 209.9 200 53.5
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.8e-52 209.9 188 58.5
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 3.0e-52 209.1 195 56.4
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 3.0e-52 209.1 198 55.6
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 3.0e-52 209.1 200 55.0
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 3.0e-52 209.1 202 54.0
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 4.0e-52 208.8 195 55.9
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 6.8e-52 208.0 202 53.5
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 8.8e-52 207.6 197 53.8
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.2e-51 207.2 198 54.5
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 1.5e-51 206.8 185 59.5
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 4.4e-51 205.3 180 58.9
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 7.5e-51 204.5 186 58.6
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 9.8e-51 204.1 165 63.0
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.3e-50 203.8 196 53.6
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 2.2e-50 203.0 200 53.0
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 6.3e-50 201.4 188 56.4
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 8.3e-50 201.1 198 55.1
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.1e-49 200.7 185 57.3
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 1.1e-49 200.7 205 52.2
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.8e-49 199.9 196 54.6
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 2.4e-49 199.5 200 52.5
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 5.4e-49 198.4 200 52.5
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 5.4e-49 198.4 237 48.1
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 9.1e-49 197.6 198 52.0
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 2.0e-48 196.4 200 53.0
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 2.7e-48 196.1 200 52.0
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 1.7e-47 193.4 200 50.5
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 3.8e-47 192.2 200 50.5
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 5.0e-47 191.8 199 53.8
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 6.5e-47 191.4 155 63.2
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 8.6e-47 191.0 250 45.6
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 1.1e-46 190.7 185 53.5
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 1.9e-46 189.9 200 48.0
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 1.9e-46 189.9 200 49.5
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.5e-46 189.5 233 47.2
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 4.2e-46 188.7 200 51.0
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 6.1e-45 184.9 185 51.4
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 1.0e-44 184.1 163 60.7
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.4e-44 183.7 185 53.5
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.3e-42 177.2 177 54.8
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 1.6e-40 170.2 198 44.9
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 4.5e-40 168.7 197 45.2
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.1e-38 164.1 162 51.9
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.2e-37 160.6 186 47.8
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 4.7e-37 158.7 145 58.6
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 2.0e-35 153.3 187 49.2
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 4.4e-35 152.1 193 41.5
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 6.4e-34 148.3 146 54.8
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 9.2e-33 144.4 117 63.2
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.7e-31 140.2 155 44.5
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.3e-31 139.8 140 54.3
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 3.9e-31 139.0 185 41.6
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 6.6e-31 138.3 142 50.7
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 3.3e-30 136.0 111 62.2
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.6e-29 133.7 155 45.2
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.4e-28 130.6 114 59.6
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 3.1e-28 129.4 145 49.7
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.0e-27 126.7 89 67.4
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.4e-27 125.9 146 45.9
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 9.2e-25 117.9 125 49.6
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.3e-22 109.4 189 34.4
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 5.6e-22 108.6 84 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 5.2e-20 102.1 155 36.8
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 3.4e-19 99.4 190 32.1
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 3.4e-19 99.4 108 51.9
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 7.5e-19 98.2 103 45.6
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.3e-18 97.4 164 36.6
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 2.4e-17 93.2 84 56.0
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.5e-14 84.0 120 41.7
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 2.8e-13 79.7 61 62.3
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 3.2e-09 66.2 45 68.9
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.6e-08 62.4 57 61.4
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 2.3e-07 60.1 37 81.1
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 3.9e-07 59.3 47 59.6
Cre12.g556200 Chlamydomonas reinhardtii HOM05D006640 ORTHO05D008078 4.3e-06 55.8 128 27.3
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 9.6e-06 54.7 61 45.9


User provided reference genes

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