Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 6.5e-157 557.4 284 100.0
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 7.5e-121 437.6 284 81.3
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 4.7e-107 391.7 284 72.9
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 6.3e-104 381.3 284 73.2
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 9.1e-103 377.5 287 69.7
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 5.9e-102 374.8 287 68.6
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 1.3e-101 373.6 287 68.3
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 2.9e-101 372.5 284 69.4
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 2.5e-100 369.4 284 69.0
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.5e-100 369.4 287 68.6
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.5e-100 369.4 287 68.6
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 4.3e-100 368.6 288 70.1
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.6e-100 368.2 287 68.3
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 6.1e-99 364.8 287 69.0
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.0e-98 362.5 285 68.1
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 3.0e-98 362.5 287 67.9
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 6.8e-98 361.3 284 68.7
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.0e-97 359.8 287 67.9
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 3.4e-97 359.0 284 67.6
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 1.3e-96 357.1 284 66.9
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.7e-96 356.7 287 66.9
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.9e-96 355.9 284 65.5
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 4.9e-96 355.1 287 66.2
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.4e-96 354.8 287 67.6
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 3.2e-95 352.4 287 67.2
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 4.1e-95 352.1 287 67.2
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 9.2e-95 350.9 284 66.2
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.2e-94 350.5 284 66.2
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 2.7e-94 349.4 287 65.9
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 5.9e-94 348.2 287 66.6
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.1e-92 344.0 289 65.1
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 1.1e-92 344.0 287 65.9
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.5e-92 343.6 287 63.8
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 1.5e-92 343.6 287 65.5
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 9.5e-92 340.9 289 65.4
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 1.2e-91 340.5 289 66.8
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.6e-91 340.1 289 64.7
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.1e-91 339.7 288 64.2
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.1e-91 339.7 287 64.1
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.6e-91 339.0 287 65.9
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 1.4e-90 337.0 287 65.2
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 1.4e-90 337.0 287 65.2
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.0e-89 333.2 284 63.7
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 2.6e-89 332.8 284 65.5
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 4.4e-89 332.0 216 78.2
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 5.8e-89 331.6 286 64.0
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 5.8e-89 331.6 286 64.0
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 5.8e-89 331.6 286 64.0
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 5.8e-89 331.6 286 64.0
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 5.8e-89 331.6 287 63.1
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.3e-88 330.5 287 64.5
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 2.9e-88 329.3 286 63.6
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 2.9e-88 329.3 286 63.6
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 3.7e-88 328.9 286 62.9
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 8.3e-88 327.8 286 63.3
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.1e-87 327.4 287 62.7
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.9e-87 326.6 287 62.4
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 9.2e-87 324.3 287 61.0
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 1.6e-86 323.6 287 60.6
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.0e-86 323.2 286 62.2
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.7e-86 322.8 286 61.9
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 3.5e-86 322.4 287 63.8
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 4.6e-86 322.0 287 60.3
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 4.6e-86 322.0 287 60.3
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 3.9e-85 318.9 286 62.2
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 6.6e-85 318.2 288 60.8
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 1.1e-84 317.4 288 60.8
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.9e-84 316.6 287 63.1
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 4.3e-84 315.5 215 78.1
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 9.5e-84 314.3 287 61.0
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 1.2e-83 313.9 288 63.2
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 1.2e-83 313.9 288 60.4
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.6e-83 313.5 289 61.9
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 2.1e-83 313.2 286 60.5
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 2.8e-83 312.8 287 61.7
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 3.1e-82 309.3 286 60.5
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 8.9e-82 307.8 288 58.0
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.5e-81 307.0 287 61.3
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.5e-81 307.0 214 77.6
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 7.5e-81 304.7 287 60.3
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 7.5e-81 304.7 288 58.0
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.3e-80 303.9 300 58.7
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 8.3e-80 301.2 292 60.3
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 8.3e-80 301.2 287 59.6
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 2.4e-79 299.7 288 59.7
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 3.2e-79 299.3 288 59.7
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 4.1e-79 298.9 289 58.8
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 2.1e-78 296.6 288 60.4
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 3.0e-77 292.7 218 72.9
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.9e-76 290.0 216 72.7
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 3.3e-76 289.3 284 58.5
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.6e-75 287.0 286 58.4
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.6e-75 287.0 284 57.4
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.6e-75 287.0 286 58.4
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 2.3e-74 283.1 289 59.2
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 3.1e-74 282.7 216 71.8
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 3.4e-73 279.3 203 75.4
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 9.9e-73 277.7 286 55.2
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.7e-72 276.9 290 57.9
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.7e-72 275.8 281 56.2
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 3.2e-71 272.7 287 56.4
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.0e-69 266.2 283 54.8
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 3.9e-69 265.8 189 75.7
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 5.1e-69 265.4 292 54.1
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 5.1e-69 265.4 215 71.6
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.8e-67 259.6 290 52.8
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.0e-65 253.4 285 53.0
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 2.2e-64 250.0 283 50.5
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 4.9e-64 248.8 255 57.6
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 4.6e-62 242.3 284 52.5
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 7.8e-62 241.5 300 49.7
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 6.6e-61 238.4 290 50.0
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 9.6e-60 234.6 293 49.5
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 8.1e-59 231.5 290 51.0
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.8e-58 230.3 291 50.9
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.9e-55 220.3 294 50.0
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.9e-55 220.3 295 49.2
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 2.7e-54 216.5 290 49.3
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 2.7e-54 216.5 290 49.3
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 4.6e-54 215.7 292 46.9
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 9.6e-52 208.0 293 48.5
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 9.6e-52 208.0 293 48.5
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 2.8e-51 206.5 293 48.1
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 4.9e-48 195.7 288 46.9
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 4.8e-43 179.1 307 37.1
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.6e-41 173.3 175 54.3
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 7.6e-41 171.8 132 72.0
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.3e-40 171.0 102 84.3
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 6.5e-40 168.7 242 47.1
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 3.7e-27 126.3 108 63.9
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 5.3e-26 122.5 214 42.5
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.1e-23 114.8 114 54.4
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 2.0e-20 104.0 181 36.5
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 2.0e-20 104.0 177 33.3
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 3.1e-18 96.7 112 60.7
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 2.6e-17 93.6 171 33.3
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.7e-14 83.6 165 32.7
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 2.3e-13 80.5 196 30.6
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 6.7e-13 79.0 165 32.1
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 3.3e-12 76.6 170 29.4
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 5.9e-09 65.9 27 100.0
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.0e-08 65.1 30 90.0
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.3e-08 64.7 31 87.1
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 1.7e-08 64.3 32 78.1
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 5.0e-08 62.8 100 49.0
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 6.5e-08 62.4 26 96.2
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.1e-07 61.6 25 100.0
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 3.2e-07 60.1 38 65.8


User provided reference genes

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