Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 2.2e-100 369.0 190 100.0
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 1.7e-84 316.2 203 84.7
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 1.1e-83 313.5 203 83.7
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 2.7e-82 308.9 203 82.8
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 2.3e-78 295.8 190 84.2
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 3.1e-78 295.4 203 79.8
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 1.3e-76 290.0 203 76.8
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 1.3e-73 280.0 173 86.7
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 2.3e-73 279.3 203 74.4
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 2.3e-73 279.3 196 74.0
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 1.1e-72 276.9 202 72.8
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 1.8e-70 269.6 203 71.4
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 2.3e-70 269.2 201 73.1
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 2.3e-70 269.2 203 71.4
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 4.0e-70 268.5 203 70.9
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 1.5e-69 266.5 193 73.6
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 1.5e-69 266.5 195 72.8
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.5e-69 266.5 201 72.1
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 2.6e-69 265.8 201 71.6
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 4.4e-69 265.0 203 69.5
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 7.6e-69 264.2 203 69.5
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 7.6e-69 264.2 201 71.1
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 7.6e-69 264.2 201 71.1
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 9.9e-69 263.8 203 70.0
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 2.2e-68 262.7 201 70.6
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.7e-68 261.9 201 72.1
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 1.1e-67 260.4 203 70.0
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.1e-67 260.4 201 71.1
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 1.6e-66 256.5 201 69.7
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 2.1e-66 256.1 202 68.8
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.3e-65 253.4 205 69.8
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 5.1e-65 251.5 192 72.4
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 8.6e-65 250.8 201 69.7
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 8.6e-65 250.8 203 68.0
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 1.1e-64 250.4 203 68.0
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 1.1e-64 250.4 201 67.7
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.1e-64 250.4 209 67.9
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 4.3e-64 248.4 203 67.0
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 5.6e-64 248.1 203 67.0
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 1.2e-63 246.9 207 66.7
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 2.8e-63 245.7 201 67.2
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 3.6e-63 245.4 200 65.0
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 3.6e-63 245.4 201 66.2
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 4.7e-63 245.0 201 67.2
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 6.2e-63 244.6 201 66.2
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 1.8e-62 243.0 157 84.7
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 4.0e-62 241.9 201 67.2
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 4.0e-62 241.9 201 62.7
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 1.2e-61 240.4 201 67.7
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 1.2e-61 240.4 201 64.7
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 5.8e-61 238.0 201 65.2
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 7.6e-61 237.7 221 61.5
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 1.7e-60 236.5 202 65.8
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 2.9e-60 235.7 201 64.7
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 4.9e-60 235.0 201 64.7
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 6.4e-60 234.6 201 64.2
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 6.4e-60 234.6 201 64.2
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 8.4e-60 234.2 201 63.7
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 8.4e-60 234.2 201 66.7
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 1.1e-59 233.8 201 65.2
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 1.4e-59 233.4 228 57.0
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 1.4e-59 233.4 201 64.2
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.9e-59 233.0 203 67.0
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 2.4e-59 232.6 246 57.3
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 3.2e-59 232.3 201 63.7
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 3.2e-59 232.3 201 64.7
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 4.2e-59 231.9 201 62.2
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 5.4e-59 231.5 201 63.2
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 5.4e-59 231.5 201 61.2
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 5.4e-59 231.5 201 66.7
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 5.4e-59 231.5 200 61.5
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 7.1e-59 231.1 200 61.0
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 1.6e-58 229.9 201 61.7
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 1.6e-58 229.9 201 62.2
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 1.6e-58 229.9 200 65.5
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 2.1e-58 229.6 197 64.5
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.1e-58 229.6 203 61.6
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 2.7e-58 229.2 201 60.7
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 2.7e-58 229.2 201 60.7
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 3.5e-58 228.8 201 62.2
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 3.5e-58 228.8 202 61.4
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 7.8e-58 227.6 202 60.9
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 7.8e-58 227.6 203 61.1
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 7.8e-58 227.6 203 61.1
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 1.0e-57 227.3 201 60.7
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 1.0e-57 227.3 201 61.2
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 1.0e-57 227.3 201 60.7
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 2.3e-57 226.1 201 59.7
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 2.3e-57 226.1 201 60.7
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 3.0e-57 225.7 201 61.2
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 3.0e-57 225.7 197 64.0
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 5.1e-57 224.9 207 59.9
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 6.6e-57 224.6 201 59.2
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 6.6e-57 224.6 201 60.2
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 6.6e-57 224.6 209 58.9
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 6.6e-57 224.6 197 62.9
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 1.5e-56 223.4 201 60.7
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.9e-56 223.0 205 60.5
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 3.3e-56 222.2 148 83.8
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 5.6e-56 221.5 207 60.9
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 8.1e-55 217.6 201 62.7
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 8.1e-55 217.6 201 58.2
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 1.4e-54 216.9 118 96.6
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 1.8e-54 216.5 191 63.9
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 2.4e-54 216.1 194 64.4
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 7.6e-53 211.1 198 59.6
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 2.9e-52 209.1 203 56.7
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 5.4e-51 204.9 184 61.4
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 2.1e-50 203.0 174 66.1
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 6.0e-50 201.4 205 54.1
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 2.3e-49 199.5 203 55.2
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 2.3e-49 199.5 157 70.1
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 3.9e-49 198.7 203 55.7
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 5.1e-49 198.4 169 65.7
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 5.1e-49 198.4 203 55.7
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 8.7e-49 197.6 172 62.8
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 1.1e-48 197.2 203 55.2
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 1.9e-48 196.4 203 54.7
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 3.3e-48 195.7 182 62.6
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 7.3e-48 194.5 174 60.9
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 1.3e-47 193.7 195 59.0
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 3.6e-47 192.2 172 60.5
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 4.8e-47 191.8 161 65.8
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 3.1e-46 189.1 216 52.3
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 6.9e-46 188.0 200 54.5
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 4.5e-45 185.3 199 53.3
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 2.2e-44 183.0 227 47.1
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 8.4e-44 181.0 212 55.7
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 8.4e-44 181.0 200 52.0
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 2.7e-42 176.0 203 51.7
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 4.6e-42 175.3 200 51.0
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 3.3e-40 169.1 203 46.8
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.3e-39 167.2 203 47.8
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 4.0e-38 162.2 209 48.3
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 2.0e-37 159.8 202 48.5
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 2.0e-37 159.8 167 56.9
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 6.5e-36 154.8 137 62.0
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 1.6e-34 150.2 187 47.1
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 2.1e-34 149.8 148 58.1
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 2.7e-34 149.4 124 66.9
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 2.8e-31 139.4 215 43.7
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 4.1e-30 135.6 91 74.7
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 1.2e-29 134.0 223 38.6
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 7.6e-29 131.3 130 58.5
Rhsim05G0177800 Rhododendron simsii HOM05D003159 ORTHO05D000029 1.6e-26 123.6 188 44.1
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 3.9e-25 119.0 83 75.9
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 7.4e-24 114.8 114 59.6
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 9.7e-24 114.4 68 80.9
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea HOM05D003159 ORTHO05D003780 3.7e-23 112.5 104 61.5
TAR362G1104 Trochodendron aralioides HOM05D003159 ORTHO05D003468 1.4e-22 110.5 138 49.3
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.2e-20 103.2 119 53.8
BcaC04g20281 Brassica carinata HOM05D003159 ORTHO05D003780 2.9e-20 102.8 74 66.2
FAN14G5085 Fragaria x ananassa HOM05D003159 ORTHO05D003780 6.5e-20 101.7 115 55.7
Glyma.01G101050 Glycine max HOM05D003159 ORTHO05D003780 6.5e-20 101.7 99 60.6
FAN09G3766 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.2e-18 97.4 103 58.3
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 1.2e-18 97.4 72 65.3
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 1.6e-18 97.1 98 59.2
Gohir.A11G250300 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.6e-18 97.1 66 71.2
BolC9t57426H Brassica oleracea HOM05D003159 ORTHO05D003780 2.7e-18 96.3 74 64.9
Ciclev10021626m.g Citrus clementina HOM05D003159 ORTHO05D003780 4.6e-18 95.5 146 42.5
arahy.Tifrunner.gnm1.ann1.I3FRE1 Arachis hypogaea HOM05D003159 ORTHO05D003780 7.9e-18 94.7 98 57.1
Nitab4.5_0011494g0040 Nicotiana tabacum HOM05D003159 ORTHO05D033874 1.4e-17 94.0 66 71.2
Cc06_g22420 Coffea canephora HOM05D003159 ORTHO05D003780 3.9e-17 92.4 65 69.2
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 2.5e-16 89.7 86 51.2
Lalb_Chr06g0166731 Lupinus albus HOM05D003159 ORTHO05D003780 9.7e-16 87.8 68 60.3
SEGI_34284 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 2.8e-15 86.3 99 53.5
CSS0017783 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D033874 3.7e-15 85.9 66 65.2
TAR406G0002 Trochodendron aralioides HOM05D003159 ORTHO05D003780 3.6e-10 69.3 69 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1733 Anthoceros agrestis HOM05D003159 ORTHO05D003780 2.2e-07 60.1 77 41.6
arahy.Tifrunner.gnm1.ann1.EY0MZ8 Arachis hypogaea HOM05D000422 ORTHO05D010939 1.4e-06 57.4 72 52.8
GSVIVG01036259001 Vitis vinifera HOM05D003159 ORTHO05D003780 1.4e-06 57.4 105 51.4
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 3.1e-06 56.2 33 81.8


User provided reference genes

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