Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0165100 Salix brachista HOM05D005208 ORTHO05D006415 1.1e-115 419.9 202 100.0
Rhsim07G0054400 Rhododendron simsii HOM05D005208 ORTHO05D006415 1.5e-35 153.7 202 48.0
arahy.Tifrunner.gnm1.ann1.V9LFMD Arachis hypogaea HOM05D005208 ORTHO05D006415 3.4e-35 152.5 202 49.0
Haze_03233 Corylus avellana HOM05D005208 ORTHO05D006415 1.3e-34 150.6 204 48.5
vmacro07761 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 2.2e-34 149.8 202 47.5
Ciclev10033061m.g Citrus clementina HOM05D005208 ORTHO05D006415 3.8e-34 149.1 202 48.5
DCAR_006299 Daucus carota HOM05D005208 ORTHO05D006415 3.8e-34 149.1 202 48.5
Potri.001G269500 Populus trichocarpa HOM05D005208 ORTHO05D006415 3.8e-34 149.1 202 48.5
Potri.009G064000 Populus trichocarpa HOM05D005208 ORTHO05D006415 3.8e-34 149.1 202 48.5
Manes.10G145800 Manihot esculenta HOM05D005208 ORTHO05D006415 1.1e-33 147.5 202 48.0
Manes.10G146000 Manihot esculenta HOM05D005208 ORTHO05D006415 1.1e-33 147.5 202 48.0
Sabra09G0047300 Salix brachista HOM05D005208 ORTHO05D006415 1.1e-33 147.5 202 48.0
TAR369G0402 Trochodendron aralioides HOM05D005208 ORTHO05D006415 1.1e-33 147.5 202 47.5
CSS0039411 Camellia sinensis var. sinensis HOM05D005208 ORTHO05D006415 1.4e-33 147.1 202 48.0
Eucgr.K01365 Eucalyptus grandis HOM05D005208 ORTHO05D006415 1.4e-33 147.1 202 48.0
Gohir.A08G027400 Gossypium hirsutum HOM05D005208 ORTHO05D006415 1.4e-33 147.1 202 48.0
Gohir.D08G038100 Gossypium hirsutum HOM05D005208 ORTHO05D006415 1.4e-33 147.1 202 48.0
Gorai.004G036100 Gossypium raimondii HOM05D005208 ORTHO05D006415 1.4e-33 147.1 202 48.0
Lalb_Chr12g0205961 Lupinus albus HOM05D005208 ORTHO05D006415 1.4e-33 147.1 202 47.5
MD07G1007200 Malus domestica HOM05D005208 ORTHO05D006415 1.4e-33 147.1 202 48.0
RcHm_v2.0_Chr1g0314961 Rosa chinensis HOM05D005208 ORTHO05D006415 1.4e-33 147.1 202 48.0
Thecc.01G413400 Theobroma cacao HOM05D005208 ORTHO05D006415 1.4e-33 147.1 202 48.0
CANSAT11G1283 Cannabis sativa HOM05D005208 ORTHO05D006415 1.9e-33 146.7 202 48.0
Nn7g36187 Nelumbo nucifera HOM05D005208 ORTHO05D006415 1.9e-33 146.7 202 47.5
FAN03G3338 Fragaria x ananassa HOM05D005208 ORTHO05D006415 2.4e-33 146.4 202 47.5
FAN06G3906 Fragaria x ananassa HOM05D005208 ORTHO05D006415 2.4e-33 146.4 202 47.5
FAN10G1294 Fragaria x ananassa HOM05D005208 ORTHO05D006415 2.4e-33 146.4 202 47.5
Actinidia36719 Actinidia chinensis HOM05D005208 ORTHO05D006415 3.2e-33 146.0 202 48.0
Dinv43460 Davidia involucrata HOM05D005208 ORTHO05D006415 3.2e-33 146.0 202 47.5
AUR62007315 Chenopodium quinoa HOM05D005208 ORTHO05D006415 4.2e-33 145.6 202 47.5
AUR62018690 Chenopodium quinoa HOM05D005208 ORTHO05D006415 4.2e-33 145.6 202 47.5
Haze_23082 Corylus avellana HOM05D005208 ORTHO05D006415 4.2e-33 145.6 202 47.0
Glyma.08G105900 Glycine max HOM05D005208 ORTHO05D006415 4.2e-33 145.6 202 47.5
Phvul.L003846 Phaseolus vulgaris HOM05D005208 ORTHO05D006415 4.2e-33 145.6 202 47.5
VMungo1127G1122 Vigna mungo HOM05D005208 ORTHO05D006415 4.2e-33 145.6 202 47.5
COL.COLO4_23915 Corchorus olitorius HOM05D005208 ORTHO05D006415 5.4e-33 145.2 201 47.8
Medtr7g065100 Medicago truncatula HOM05D005208 ORTHO05D006415 5.4e-33 145.2 202 47.5
Duzib138G0119 Durio zibethinus HOM05D005208 ORTHO05D006415 7.1e-33 144.8 202 47.0
Duzib268G0815 Durio zibethinus HOM05D005208 ORTHO05D006415 7.1e-33 144.8 202 47.0
Cc02_g27590 Coffea canephora HOM05D005208 ORTHO05D006415 9.3e-33 144.4 202 46.5
Sed0001189 Sechium edule HOM05D005208 ORTHO05D006415 9.3e-33 144.4 202 46.5
arahy.Tifrunner.gnm1.ann1.SLE1RG Arachis hypogaea HOM05D005208 ORTHO05D006415 1.2e-32 144.1 202 47.5
Glyma.05G149300 Glycine max HOM05D005208 ORTHO05D006415 1.2e-32 144.1 202 47.0
MBI11_g24620_MAGBIO Magnolia biondii HOM05D005208 ORTHO05D006415 1.2e-32 144.1 201 47.3
PSO447G0208 Papaver somniferum HOM05D005208 ORTHO05D006415 1.2e-32 144.1 202 47.0
TWI14G0133 Tripterygium wilfordii HOM05D005208 ORTHO05D006415 1.2e-32 144.1 202 47.5
Ah.12g055270 Amaranthus hybridus HOM05D005208 ORTHO05D006415 1.6e-32 143.7 202 47.0
MSTRG.5012 Avicennia marina HOM05D005208 ORTHO05D006415 1.6e-32 143.7 202 46.5
ECA234G2562 Erigeron canadensis HOM05D005208 ORTHO05D006415 1.6e-32 143.7 202 47.0
TAR633G0908 Trochodendron aralioides HOM05D005208 ORTHO05D006415 1.6e-32 143.7 201 46.8
FAN01G2640 Fragaria x ananassa HOM05D005208 ORTHO05D006415 2.1e-32 143.3 202 47.0
Hund19747 Selenicereus undatus HOM05D005208 ORTHO05D006415 2.1e-32 143.3 202 46.5
EL10Ac7g17127 Beta vulgaris HOM05D005208 ORTHO05D006415 2.7e-32 142.9 216 44.0
GSVIVG01032062001 Vitis vinifera HOM05D005208 ORTHO05D006415 2.7e-32 142.9 201 47.3
CsaV3_3G032260 Cucumis sativus L. HOM05D005208 ORTHO05D006415 3.5e-32 142.5 202 47.0
Oeu064261.1 Olea europaea HOM05D005208 ORTHO05D006415 3.5e-32 142.5 202 46.5
QL04p005416 Quercus lobata HOM05D005208 ORTHO05D006415 3.5e-32 142.5 202 47.5
CiPaw.13G163800 Carya illinoinensis HOM05D005208 ORTHO05D006415 4.6e-32 142.1 202 47.0
Ca_27575_v3 Cicer arietinum L. HOM05D005208 ORTHO05D006415 4.6e-32 142.1 202 46.5
ClCG10G012490 Citrullus lanatus HOM05D005208 ORTHO05D006415 4.6e-32 142.1 202 46.5
PGR119G1849 Punica granatum HOM05D005208 ORTHO05D006415 4.6e-32 142.1 202 48.0
QL02p017788 Quercus lobata HOM05D005208 ORTHO05D006415 4.6e-32 142.1 202 47.5
Sc09g0000550 Simmondsia chinensis HOM05D005208 ORTHO05D006415 7.8e-32 141.4 202 46.0
CDE04G0027 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 1.3e-31 140.6 202 45.5
CDE07G1423 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 1.3e-31 140.6 202 45.5
HanXRQChr16g0519561 Helianthus annuus HOM05D005208 ORTHO05D006415 1.3e-31 140.6 202 46.0
Psat4g195040 Pisum sativum HOM05D005208 ORTHO05D006415 1.3e-31 140.6 202 46.5
SalBow4G0699 Salvia bowleyana HOM05D005208 ORTHO05D006415 1.3e-31 140.6 202 46.5
CiPaw.13G003300 Carya illinoinensis HOM05D005208 ORTHO05D006415 1.7e-31 140.2 203 46.8
vmacro00152 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 1.7e-31 140.2 197 49.2
HPP92_022787 Vanilla planifolia HOM05D005208 ORTHO05D006415 1.7e-31 140.2 202 45.0
ATR0605G393 Amborella trichopoda HOM05D005208 ORTHO05D006415 2.3e-31 139.8 201 45.8
Carub.0005s0302 Capsella rubella HOM05D005208 ORTHO05D006415 2.3e-31 139.8 202 46.0
ECA234G4110 Erigeron canadensis HOM05D005208 ORTHO05D006415 2.3e-31 139.8 202 46.0
Lj3g0003154 Lotus japonicus HOM05D005208 ORTHO05D006415 2.3e-31 139.8 202 46.5
Sc20g0007120 Simmondsia chinensis HOM05D005208 ORTHO05D006415 2.3e-31 139.8 200 46.5
Oeu039120.1 Olea europaea HOM05D005208 ORTHO05D006415 3.9e-31 139.0 201 45.8
Peaxi162Scf00200g01315 Petunia axillaris HOM05D005208 ORTHO05D006415 3.9e-31 139.0 202 45.0
Sp2g14670 Schrenkiella parvula HOM05D005208 ORTHO05D006415 5.1e-31 138.7 202 45.5
THA.LOC104809874 Tarenaya hassleriana HOM05D005208 ORTHO05D006415 5.1e-31 138.7 201 45.8
CARHR146260 Cardamine hirsuta HOM05D005208 ORTHO05D006415 6.6e-31 138.3 202 45.0
SGA_v2.0_scaffold4G02254 Striga asiatica HOM05D005208 ORTHO05D006415 6.6e-31 138.3 201 45.8
Lalb_Chr25g0283181 Lupinus albus HOM05D005208 ORTHO05D006415 8.7e-31 137.9 202 45.5
Migut.H01631 Erythranthe guttata HOM05D005208 ORTHO05D006415 1.1e-30 137.5 202 45.0
Solyc09g009640.3 Solanum lycopersicum HOM05D005208 ORTHO05D006415 1.1e-30 137.5 202 45.5
Sopen09g004410 Solanum pennellii HOM05D005208 ORTHO05D006415 1.1e-30 137.5 202 45.5
PGSC0003DMG400002694 Solanum tuberosum HOM05D005208 ORTHO05D006415 1.1e-30 137.5 202 45.5
CAN.G397.27 Capsicum annuum HOM05D005208 ORTHO05D006415 3.3e-30 136.0 201 45.3
Hund22069 Selenicereus undatus HOM05D005208 ORTHO05D006415 3.3e-30 136.0 200 45.0
AL5G13680 Arabidopsis lyrata HOM05D005208 ORTHO05D006415 4.3e-30 135.6 202 45.0
Glyma.12G239000 Glycine max HOM05D005208 ORTHO05D006415 4.3e-30 135.6 202 46.0
Nitab4.5_0002068g0050 Nicotiana tabacum HOM05D005208 ORTHO05D006415 9.6e-30 134.4 202 44.6
Thhalv10005187m.g Eutrema salsugineum HOM05D005208 ORTHO05D006415 1.3e-29 134.0 202 45.0
AT2G03870 Arabidopsis thaliana HOM05D005208 ORTHO05D006415 2.1e-29 133.3 202 44.6
BcaC03g17248 Brassica carinata HOM05D005208 ORTHO05D006415 2.1e-29 133.3 202 44.6
C02p51820 Brassica napus HOM05D005208 ORTHO05D013951 2.1e-29 133.3 202 44.6
BolC2t11268H Brassica oleracea HOM05D005208 ORTHO05D006415 2.1e-29 133.3 202 44.6
SEGI_02845 Sequoiadendron giganteum HOM05D005208 ORTHO05D006415 8.1e-29 131.3 199 44.7
A02p33690 Brassica napus HOM05D005208 ORTHO05D006415 1.1e-28 131.0 202 44.1
BraA02t08388Z Brassica rapa HOM05D005208 ORTHO05D006415 1.1e-28 131.0 202 44.1
AagrBONN_evm.TU.Sc2ySwM_117.3183 Anthoceros agrestis HOM05D005208 ORTHO05D006415 1.4e-28 130.6 202 43.6
BcaC06g31141 Brassica carinata HOM05D005208 ORTHO05D006415 1.4e-28 130.6 202 44.1
Mapoly0087s0020 Marchantia polymorpha HOM05D005208 ORTHO05D006415 1.8e-28 130.2 202 44.1
BcaB07g30643 Brassica carinata HOM05D005208 ORTHO05D006415 2.4e-28 129.8 199 44.2
C07p34250 Brassica napus HOM05D005208 ORTHO05D006415 5.3e-28 128.6 201 43.8
A06p42830 Brassica napus HOM05D005208 ORTHO05D006415 6.9e-28 128.3 198 43.9
Aa31LG2G6760 Aethionema arabicum HOM05D005208 ORTHO05D006415 1.5e-27 127.1 213 42.7
BolC7t43954H Brassica oleracea HOM05D005208 ORTHO05D006415 1.5e-27 127.1 200 43.5
BraA06t27195Z Brassica rapa HOM05D005208 ORTHO05D006415 2.6e-27 126.3 197 43.7
Os08g0177700 Oryza sativa ssp. japonica HOM05D005208 ORTHO05D006415 5.8e-27 125.2 202 44.1
AagrBONN_evm.TU.Sc2ySwM_368.1897 Anthoceros agrestis HOM05D005208 ORTHO05D006415 2.2e-26 123.2 202 43.1
SMO141G0024 Selaginella moellendorffii HOM05D005208 ORTHO05D006415 6.4e-26 121.7 201 41.3
Pp3c8_4480 Physcomitrium patens HOM05D005208 ORTHO05D006415 1.1e-25 120.9 196 41.8
Zm00001eb069280 Zea mays HOM05D005208 ORTHO05D006415 5.4e-25 118.6 196 41.3
Pp3c4_9640 Physcomitrium patens HOM05D005208 ORTHO05D006415 9.3e-25 117.9 197 40.6
TPR.G21719 Trifolium pratense HOM05D005208 ORTHO05D006415 9.3e-25 117.9 139 49.6
Zm00001eb431700 Zea mays HOM05D005208 ORTHO05D006415 9.3e-25 117.9 202 42.1
Nitab4.5_0023856g0010 Nicotiana tabacum HOM05D005208 ORTHO05D006415 2.1e-24 116.7 192 41.7
Lj4g0005394 Lotus japonicus HOM05D005208 ORTHO05D006415 4.6e-24 115.5 195 42.6
Dinv09372 Davidia involucrata HOM05D005208 ORTHO05D006415 7.9e-24 114.8 193 42.5
Medtr8g036205 Medicago truncatula HOM05D005208 ORTHO05D006415 2.5e-22 109.8 188 42.6
MCO14G462 Micromonas commoda HOM05D005208 ORTHO05D006415 5.6e-22 108.6 200 37.0
MD02G1314900 Malus domestica HOM05D005208 ORTHO05D006415 3.7e-21 105.9 144 47.9
FvH4_7g00800 Fragaria vesca HOM05D005208 ORTHO05D006415 6.2e-21 105.1 144 47.2
Nn2g15393 Nelumbo nucifera HOM05D005208 ORTHO05D006415 8.1e-21 104.8 144 47.2
Atru.chr11.2641 Acer truncatum HOM05D005208 ORTHO05D006415 1.1e-20 104.4 144 47.2
PSO210G4938 Papaver somniferum HOM05D005208 ORTHO05D006415 2.4e-20 103.2 148 45.9
Prupe.2G010100 Prunus persica HOM05D005208 ORTHO05D006415 2.4e-20 103.2 142 47.9
Sabra01G0090000 Salix brachista HOM05D005208 ORTHO05D009147 3.4e-19 99.4 48 97.9
Aqoxy5G03601_Aqoxy5G03602 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 5.8e-19 98.6 141 46.8
Cre03.g164101 Chlamydomonas reinhardtii HOM05D005208 ORTHO05D006415 3.8e-18 95.9 198 34.3
Aqoxy6G00475 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 6.5e-18 95.1 141 46.1
Migut.N01478 Erythranthe guttata HOM05D005208 ORTHO05D006415 6.5e-18 95.1 202 35.6
TPR.G34585 Trifolium pratense HOM05D000107 ORTHO05D000062 8.4e-18 94.7 103 55.3
Ah.08g209200 Amaranthus hybridus HOM05D005208 ORTHO05D006415 3.5e-16 89.4 85 57.6
BolC7t45182H Brassica oleracea HOM05D005208 ORTHO05D006415 4.6e-16 89.0 182 37.9
QL02p017866 Quercus lobata HOM05D005208 ORTHO05D006415 5.7e-14 82.0 75 58.7
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 2.1e-13 80.1 77 55.8
MELO3C023964.2 Cucumis melo HOM05D005208 ORTHO05D006415 1.1e-12 77.8 76 56.6
PRCOL_00006352 Prasinoderma coloniale HOM05D000731 ORTHO05D005852 1.4e-12 77.4 196 31.6
MELO3C000014.2 Cucumis melo HOM05D005208 ORTHO05D006415 6.9e-12 75.1 113 44.2
Cpa.g.sc3559.1 Carica papaya HOM05D005208 ORTHO05D006415 2.0e-11 73.6 112 44.6
Sed0010704 Sechium edule HOM05D005208 ORTHO05D006415 4.5e-11 72.4 129 39.5
Haze_27705 Corylus avellana HOM05D005208 ORTHO05D006415 1.4e-09 67.4 193 25.9
TPR.G34928 Trifolium pratense HOM05D009458 ORTHO05D014663 2.5e-09 66.6 45 68.9
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 6.7e-07 58.5 28 100.0
Pp3c3_27830 Physcomitrium patens HOM05D005208 ORTHO05D006415 1.9e-06 57.0 197 27.4
MELO3C030676.2 Cucumis melo HOM05D005208 ORTHO05D006415 3.3e-06 56.2 28 96.4
EL10Ac6g14102 Beta vulgaris HOM05D005208 ORTHO05D006415 9.7e-06 54.7 28 92.9


User provided reference genes

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