Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 3.5e-228 794.7 414 100.0
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 6.9e-208 727.2 422 91.5
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.8e-179 632.9 422 81.5
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 6.3e-177 624.4 417 81.3
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 4.1e-160 568.5 426 73.2
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.0e-158 563.9 404 72.8
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.8e-155 553.1 432 70.8
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 8.8e-155 550.8 397 71.0
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.1e-154 550.4 434 70.3
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.3e-153 547.0 428 69.6
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.8e-152 543.1 404 71.3
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 9.1e-152 540.8 404 71.5
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.0e-150 537.3 404 71.5
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.3e-150 537.0 430 70.2
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.7e-150 536.6 429 69.2
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 7.2e-149 531.2 436 69.5
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 7.2e-149 531.2 432 67.6
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.1e-148 529.6 385 68.6
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 2.7e-148 529.3 427 69.1
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.6e-148 528.9 438 68.7
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.6e-148 528.9 438 68.5
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.0e-147 525.4 438 68.9
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.7e-145 520.0 434 67.1
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 2.8e-145 519.2 425 65.6
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.1e-144 517.3 434 67.5
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.4e-144 516.9 395 68.9
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 3.1e-144 515.8 397 67.3
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 3.5e-143 512.3 433 66.7
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 5.9e-143 511.5 398 68.3
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.0e-142 510.8 418 66.3
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.0e-142 510.8 438 67.1
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.3e-142 510.4 384 71.9
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 2.2e-142 509.6 430 66.5
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.9e-142 509.2 395 67.6
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.9e-142 509.2 427 62.8
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.8e-142 508.8 437 66.6
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 6.5e-142 508.1 425 67.5
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 6.5e-142 508.1 391 69.1
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 8.5e-142 507.7 437 66.6
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 8.5e-142 507.7 437 66.6
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.5e-141 506.9 429 66.7
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 2.5e-141 506.1 423 62.9
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.5e-141 506.1 396 68.4
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.2e-141 505.4 437 66.4
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.2e-141 505.4 422 62.6
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 9.4e-141 504.2 427 67.4
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.6e-140 503.4 429 67.4
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.7e-140 502.7 396 68.4
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 4.7e-140 501.9 379 67.0
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 8.0e-140 501.1 391 67.8
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.0e-139 500.7 391 68.0
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.3e-139 499.6 427 66.0
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 3.0e-139 499.2 399 63.2
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.0e-139 499.2 403 64.0
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.2e-138 497.3 386 66.3
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.2e-138 497.3 398 65.6
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 2.6e-138 496.1 443 63.7
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 3.4e-138 495.7 419 67.1
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 7.5e-138 494.6 414 65.5
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.8e-137 492.7 418 67.0
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.8e-137 492.7 438 61.0
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 3.7e-137 492.3 418 67.0
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 3.7e-137 492.3 418 67.0
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 3.7e-137 492.3 433 64.2
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 8.3e-137 491.1 376 66.5
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 1.1e-136 490.7 379 67.8
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 4.1e-136 488.8 381 69.0
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 9.2e-136 487.6 438 61.2
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 9.2e-136 487.6 419 67.8
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.6e-135 486.9 427 63.9
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 5.9e-135 485.0 384 65.9
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 3.8e-134 482.3 430 61.4
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 5.0e-134 481.9 422 64.0
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 6.6e-134 481.5 390 62.8
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 8.6e-134 481.1 431 63.8
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-133 480.7 385 64.4
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.5e-133 480.3 392 65.3
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.5e-133 480.3 387 65.1
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 9.5e-133 477.6 396 64.9
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 9.5e-133 477.6 384 65.6
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.8e-132 476.1 400 64.0
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.0e-131 474.2 409 61.6
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.4e-131 473.8 416 63.0
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.3e-131 473.0 392 64.5
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 3.0e-131 472.6 436 60.6
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 5.2e-131 471.9 392 64.0
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 2.0e-130 469.9 403 61.8
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 4.4e-130 468.8 394 64.2
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 2.9e-129 466.1 398 63.1
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.4e-128 463.8 411 60.3
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.8e-128 463.4 420 63.1
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.6e-127 460.3 361 66.5
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.6e-127 460.3 403 61.8
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 5.9e-127 458.4 415 61.0
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 8.6e-126 454.5 399 64.7
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 8.6e-126 454.5 402 61.2
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.5e-125 453.0 388 62.6
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 5.6e-125 451.8 389 62.2
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 7.3e-125 451.4 395 62.0
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.8e-124 449.5 388 62.4
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 6.8e-123 444.9 433 58.7
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 8.9e-123 444.5 417 62.4
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.2e-122 444.1 388 61.9
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.4e-122 442.2 388 61.6
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 7.5e-122 441.4 424 62.7
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 2.2e-121 439.9 417 62.1
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.4e-120 437.2 389 61.2
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.9e-120 436.8 387 58.9
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.2e-120 436.0 394 57.6
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 3.5e-119 432.6 372 60.2
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.8e-119 431.4 422 55.9
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 5.0e-118 428.7 378 60.8
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.4e-115 420.6 395 58.5
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.1e-109 401.0 386 56.7
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.1e-109 401.0 374 55.3
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 9.5e-109 397.9 390 55.1
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.8e-107 393.7 321 64.2
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 5.2e-107 392.1 373 55.0
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 2.6e-106 389.8 461 51.0
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 2.6e-106 389.8 303 66.0
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.3e-102 376.7 391 51.4
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.8e-90 335.5 332 56.6
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.4e-80 304.3 433 45.0
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.3e-78 297.7 245 62.9
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.6e-63 247.7 218 59.2
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.6e-63 246.1 303 45.2
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 5.7e-61 239.2 390 36.9
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 3.7e-60 236.5 241 49.0
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 8.2e-60 235.3 235 56.2
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.9e-57 226.9 207 58.5
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 3.3e-53 213.4 189 73.0
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 8.2e-52 208.8 152 68.4
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.1e-48 198.4 190 66.3
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.9e-48 197.6 152 69.7
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.7e-41 174.5 209 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 3.2e-40 170.2 306 34.3
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 3.0e-38 163.7 359 31.2
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 2.5e-16 90.9 113 48.7
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.8e-14 84.7 75 53.3
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.0e-14 84.0 69 62.3
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.8e-11 74.7 334 23.4


User provided reference genes

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