Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 2566.2 1321 100.0
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 2291.5 1326 89.9
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1896.3 1318 75.3
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1859.3 1319 74.1
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1844.3 1326 72.8
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1831.6 1326 71.9
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1821.6 1333 71.3
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1820.8 1322 72.5
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1819.7 1320 72.7
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1816.2 1333 70.8
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1815.8 1333 71.0
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1811.2 1321 71.5
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1804.6 1320 71.7
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1796.6 1325 70.3
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1786.9 1321 70.3
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1783.1 1325 69.7
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1782.7 1318 70.3
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1779.2 1320 70.9
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1779.2 1328 69.8
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1778.5 1325 70.1
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1764.2 1348 68.6
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1758.8 1321 70.2
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1756.5 1325 69.3
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1747.3 1325 68.8
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1743.4 1325 69.4
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1733.8 1325 68.6
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1732.6 1324 68.6
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1731.8 1322 68.8
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1728.8 1324 68.7
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1728.8 1329 68.8
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1726.1 1325 68.5
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1719.9 1324 68.5
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1717.2 1329 68.2
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1713.7 1325 68.0
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1711.8 1329 69.0
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1711.8 1326 67.3
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1710.3 1318 66.8
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1704.5 1396 65.7
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1704.5 1360 65.7
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1702.2 1318 66.7
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1692.9 1325 67.2
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1688.3 1325 66.3
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1687.9 1326 66.4
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1682.9 1323 66.6
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1682.5 1319 66.5
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1675.6 1325 66.5
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1666.7 1226 71.0
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1664.8 1315 65.2
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1662.1 1323 65.9
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1659.4 1370 64.4
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1656.7 1319 64.5
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1656.0 1319 65.0
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1656.0 1326 65.5
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1655.6 1318 65.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1648.3 1365 64.2
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1647.5 1320 65.3
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1644.8 1326 66.5
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1643.2 1322 64.5
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1641.7 1380 64.2
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1634.4 1327 65.3
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1624.0 1323 63.9
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1624.0 1328 64.3
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1623.2 1320 64.8
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1622.8 1322 64.9
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1622.1 1320 64.2
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1617.8 1326 64.9
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1612.0 1320 64.9
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1608.2 1317 63.7
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1604.3 1321 64.7
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1603.6 1302 65.7
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1602.8 1247 68.2
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1602.4 1221 68.6
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1596.6 1320 64.3
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1588.2 1322 64.0
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1587.4 1324 63.7
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1564.3 1323 63.7
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1563.9 1326 62.0
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1555.4 1320 63.1
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1541.2 1311 62.6
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1539.6 1311 62.6
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1539.2 1230 65.1
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1538.9 1317 62.6
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1538.9 1317 62.6
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1531.5 1335 61.1
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1516.9 1322 61.2
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1511.9 1051 73.8
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1507.7 1317 62.0
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1497.6 1356 59.4
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1491.9 1064 72.4
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1469.1 1246 62.8
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1456.0 1210 62.7
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1443.7 1320 58.5
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1435.6 1324 58.6
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1379.0 1317 56.5
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1375.9 1323 56.8
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1275.8 1081 62.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1196.8 886 69.1
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1167.9 1318 52.0
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1133.2 1010 62.4
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1124.0 894 66.9
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1117.4 1328 46.8
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1099.7 1326 46.8
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1097.8 1004 57.8
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 8.4e-300 1034.2 792 66.4
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 2.3e-289 999.6 725 72.4
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 6.7e-289 998.0 817 63.6
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 1.1e-283 980.7 1264 44.9
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 5.9e-261 905.2 1286 42.3
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.6e-218 764.2 1316 37.5
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 6.4e-207 725.7 603 64.5
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 2.9e-183 647.1 597 57.5
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 7.1e-182 642.5 617 56.4
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.9e-179 634.4 1397 33.9
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.1e-173 614.4 533 61.2
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 1.8e-169 601.3 538 60.2
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 9.0e-161 572.4 1307 31.7
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 6.3e-146 523.1 688 46.1
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.5e-127 459.9 344 68.0
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 7.7e-120 436.4 745 40.9
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.3e-119 435.6 277 79.1
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.2e-119 434.9 1129 30.5
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.8e-93 348.2 267 66.7
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.8e-93 348.2 267 66.7
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 8.9e-92 343.2 262 71.8
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.7e-90 339.0 340 53.2
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.1e-84 319.7 256 68.0
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.4e-76 292.7 200 74.0
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.7e-72 278.5 269 55.8
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 5.4e-57 227.6 179 65.9
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 7.1e-57 227.3 174 67.8
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.4e-49 203.0 161 65.2
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.0e-42 180.3 104 80.8
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.2e-41 175.3 160 58.8
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 8.8e-31 140.6 224 43.3
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 7.4e-30 137.5 140 55.0
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.0e-27 129.4 1250 21.7
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.3e-26 126.7 117 58.1
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.0e-26 124.8 162 47.5
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 3.0e-23 115.5 155 45.2
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 3.0e-23 115.5 130 46.2
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.1e-20 107.1 118 47.5
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 4.1e-20 105.1 96 55.2
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 7.0e-20 104.4 118 45.8
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 3.5e-19 102.1 121 47.9
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 7.2e-17 94.4 62 77.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 2.7e-16 92.4 121 42.1
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 3.0e-15 89.0 150 38.0
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 7.4e-14 84.3 72 58.3
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.7e-13 83.2 91 51.6
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.8e-12 79.7 50 82.0
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 1.6e-11 76.6 54 72.2
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 8.5e-10 70.9 162 32.1
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 8.0e-08 64.3 42 73.8
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 8.0e-08 64.3 243 25.5
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.0e-07 62.4 150 36.7


User provided reference genes

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