Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 5.5e-177 624.4 366 100.0
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 7.1e-108 394.8 285 92.3
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 1.3e-104 384.0 287 86.4
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 7.7e-94 348.2 281 70.8
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 2.2e-93 346.7 276 72.5
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 3.1e-42 176.8 281 48.4
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.3e-32 144.8 288 38.2
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.1e-31 141.7 288 42.0
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 1.1e-31 141.7 288 42.0
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 3.2e-31 140.2 284 39.8
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 3.2e-31 140.2 291 38.1
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 9.5e-28 128.6 291 37.5
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 3.6e-27 126.7 285 37.5
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 1.1e-26 125.2 276 38.0
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 4.0e-26 123.2 269 37.2
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 4.0e-26 123.2 269 37.2
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 4.0e-26 123.2 269 37.2
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 8.9e-26 122.1 262 38.5
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 2.0e-25 120.9 289 35.6
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.6e-25 120.6 262 38.2
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 3.4e-25 120.2 267 37.1
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 4.4e-25 119.8 262 38.5
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 5.8e-25 119.4 267 37.1
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 9.9e-25 118.6 276 38.8
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 5.4e-23 112.8 300 35.0
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 7.1e-23 112.5 300 34.3
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 9.2e-23 112.1 272 34.9
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 9.2e-23 112.1 281 36.7
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 7.8e-22 109.0 272 34.9
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.0e-21 108.6 272 34.6
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 1.7e-21 107.8 268 34.0
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 2.3e-21 107.5 287 40.4
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 3.9e-21 106.7 287 34.5
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 5.1e-21 106.3 287 34.5
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 5.1e-21 106.3 262 37.4
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 1.1e-20 105.1 279 33.3
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 2.5e-20 104.0 282 36.5
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 3.3e-20 103.6 296 36.1
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 4.3e-20 103.2 283 32.9
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 4.3e-20 103.2 325 33.2
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 7.3e-20 102.4 184 41.3
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 9.6e-20 102.1 243 37.0
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 1.6e-19 101.3 275 34.2
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 2.1e-19 100.9 282 34.8
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 3.6e-19 100.1 276 33.7
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.8e-18 97.8 275 33.8
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 5.2e-18 96.3 253 33.6
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 5.2e-18 96.3 173 39.3
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 6.9e-18 95.9 177 40.1
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 8.9e-18 95.5 276 32.6
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 1.2e-17 95.1 292 29.1
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 2.6e-17 94.0 277 36.5
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 3.4e-17 93.6 162 39.5
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 5.8e-17 92.8 247 33.6
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 9.9e-17 92.0 208 36.5
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 1.7e-16 91.3 170 40.0
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 2.2e-16 90.9 163 44.8
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 2.2e-16 90.9 274 31.4
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 2.2e-16 90.9 265 34.0
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 3.8e-16 90.1 211 35.1
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 4.9e-16 89.7 203 38.9
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 4.9e-16 89.7 294 33.0
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.9e-15 87.8 134 46.3
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.9e-15 87.8 281 32.7
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 2.4e-15 87.4 184 38.0
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 7.1e-15 85.9 279 32.6
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 9.3e-15 85.5 166 39.8
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 1.6e-14 84.7 276 29.3
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 2.1e-14 84.3 309 31.1
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 2.1e-14 84.3 245 32.2
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 6.0e-14 82.8 173 37.6
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 6.0e-14 82.8 279 30.1
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 7.8e-14 82.4 267 30.7
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 1.0e-13 82.0 171 36.3
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 1.0e-13 82.0 179 36.3
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 1.3e-13 81.6 243 34.6
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 1.3e-13 81.6 82 56.1
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 1.7e-13 81.3 246 30.9
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 3.0e-13 80.5 156 39.1
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 3.0e-13 80.5 179 36.9
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 3.0e-13 80.5 179 36.9
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 5.1e-13 79.7 247 31.2
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 1.1e-12 78.6 187 32.6
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 1.1e-12 78.6 271 31.4
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 1.5e-12 78.2 251 40.6
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 1.5e-12 78.2 173 37.6
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 3.3e-12 77.0 160 36.2
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 4.3e-12 76.6 260 29.6
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 5.6e-12 76.3 168 35.1
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 7.3e-12 75.9 239 30.1
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 2.1e-11 74.3 261 33.3
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 2.8e-11 73.9 276 28.6
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 6.2e-11 72.8 243 30.0
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 6.9e-10 69.3 172 35.5
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 9.0e-10 68.9 180 33.9
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 1.2e-09 68.6 279 28.3
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 5.8e-09 66.2 162 34.6
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 5.8e-09 66.2 162 34.6
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 5.8e-09 66.2 162 34.6
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 5.8e-09 66.2 209 32.1
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 7.6e-09 65.9 162 34.6
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 7.6e-09 65.9 162 34.6
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 6.4e-08 62.8 206 30.1
ECA233G2997 Erigeron canadensis HOM05D003457 ORTHO05D009249 1.4e-07 61.6 240 31.2
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 5.4e-07 59.7 204 32.4
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 9.3e-07 58.9 143 32.9


User provided reference genes

Program Settings