Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 5.2e-265 917.1 462 100.0
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 5.2e-257 890.6 462 96.8
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 5.7e-203 711.1 463 79.5
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 8.2e-202 707.2 460 79.1
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.4e-201 706.4 461 79.0
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.0e-199 700.3 464 77.2
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 5.0e-199 698.0 461 78.3
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 4.2e-198 694.9 464 76.5
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 5.5e-198 694.5 464 76.5
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 7.2e-198 694.1 464 76.7
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 3.6e-197 691.8 458 76.6
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 2.3e-196 689.1 458 76.2
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 3.3e-195 685.3 462 75.8
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.3e-194 683.3 414 81.6
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.3e-194 683.3 456 75.7
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 4.8e-194 681.4 457 75.9
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.1e-193 680.2 406 82.8
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 2.4e-193 679.1 457 75.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 5.3e-193 677.9 409 81.7
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.1e-193 677.2 406 82.5
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 9.1e-193 677.2 404 83.7
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 1.2e-192 676.8 463 74.9
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.2e-192 676.8 456 75.7
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 1.6e-192 676.4 464 75.2
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.0e-192 676.0 469 75.3
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 2.0e-192 676.0 461 74.4
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 3.5e-192 675.2 456 75.4
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 3.5e-192 675.2 407 82.3
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 5.9e-192 674.5 456 75.4
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 7.7e-192 674.1 467 74.7
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.0e-191 673.7 462 73.8
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.3e-191 673.3 463 74.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.7e-191 672.9 406 82.0
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 2.2e-191 672.5 467 74.7
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 2.2e-191 672.5 410 82.0
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 3.8e-191 671.8 460 75.2
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 5.0e-191 671.4 414 80.7
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 6.5e-191 671.0 464 74.6
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.5e-190 669.8 465 72.5
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 4.2e-190 668.3 456 74.8
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 7.2e-190 667.5 412 80.6
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 7.2e-190 667.5 423 78.5
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 9.4e-190 667.2 465 73.5
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.2e-189 666.8 460 73.7
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 2.1e-189 666.0 463 73.7
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 2.1e-189 666.0 460 74.1
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.1e-189 666.0 460 73.5
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.1e-189 666.0 465 73.1
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 2.7e-189 665.6 404 82.4
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 2.7e-189 665.6 385 85.2
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 3.6e-189 665.2 463 73.0
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 4.7e-189 664.8 389 83.5
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.4e-188 663.3 461 74.6
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 2.3e-188 662.5 385 83.1
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.0e-188 662.1 460 73.0
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.0e-188 662.1 475 72.4
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 3.0e-188 662.1 467 74.1
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 8.8e-188 660.6 380 84.5
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 8.8e-188 660.6 410 79.8
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 8.8e-188 660.6 468 71.6
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.1e-187 660.2 468 71.6
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.5e-187 659.8 413 80.1
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.5e-187 659.8 406 78.8
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 2.0e-187 659.4 390 82.3
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 3.3e-187 658.7 382 84.3
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.3e-187 658.7 461 75.1
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 7.5e-187 657.5 405 80.5
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 9.7e-187 657.1 468 73.1
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 9.7e-187 657.1 407 78.9
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.3e-186 656.8 418 78.9
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.7e-186 656.4 468 73.5
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 2.2e-186 656.0 463 70.8
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 2.8e-186 655.6 416 79.1
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 8.2e-186 654.1 389 82.8
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.1e-185 653.7 462 71.0
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 1.8e-185 652.9 389 81.0
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.4e-185 652.5 397 81.9
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 5.3e-185 651.4 457 74.0
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 9.1e-185 650.6 467 71.1
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.2e-184 650.2 410 77.6
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.2e-184 650.2 461 71.1
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.6e-184 649.8 460 70.9
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.7e-184 649.0 415 78.1
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.7e-183 646.4 462 70.1
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 5.0e-183 644.8 415 77.8
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.5e-182 643.3 389 81.7
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.9e-182 642.9 464 71.6
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.5e-182 642.5 408 77.9
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 3.2e-182 642.1 465 71.4
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.6e-181 639.8 405 78.3
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 1.6e-181 639.8 461 69.8
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 2.7e-181 639.0 469 70.4
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 3.6e-181 638.6 385 79.0
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 8.0e-181 637.5 466 71.5
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 6.8e-180 634.4 391 79.3
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 6.8e-180 634.4 385 80.0
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.5e-179 633.3 472 69.7
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 5.7e-179 631.3 388 79.9
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 7.5e-179 630.9 455 71.2
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 2.8e-178 629.0 466 68.7
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 2.0e-176 622.9 411 76.4
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.7e-173 612.5 397 74.6
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 8.0e-173 610.9 409 74.3
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 3.7e-170 602.1 393 74.3
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.1e-166 590.5 411 69.8
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 4.0e-156 555.4 459 65.4
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.7e-154 548.9 389 73.0
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.7e-152 542.7 357 72.3
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 3.5e-152 542.3 462 63.9
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 5.2e-148 528.5 393 66.2
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.5e-147 526.9 393 66.2
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.9e-145 520.0 377 71.6
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 8.6e-143 511.1 389 69.4
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 7.3e-142 508.1 376 66.5
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 4.4e-139 498.8 345 73.3
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 2.1e-133 479.9 345 66.1
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.8e-133 479.6 275 84.4
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.8e-132 476.9 388 60.1
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 5.2e-132 475.3 373 64.6
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 5.8e-131 471.9 380 61.3
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 3.5e-128 462.6 288 81.6
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 1.5e-126 457.2 276 80.8
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 3.2e-121 439.5 323 70.6
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.3e-118 429.5 289 71.6
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 5.6e-118 428.7 406 57.9
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.4e-114 415.2 374 61.0
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 2.1e-112 410.2 334 67.4
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.9e-111 406.0 252 79.8
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 3.0e-103 379.8 331 63.4
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 3.8e-98 362.8 214 85.5
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.2e-97 359.8 251 74.1
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 9.7e-94 348.2 358 52.0
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.8e-92 344.0 331 50.8
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.3e-90 337.8 218 78.0
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.4e-87 327.8 213 73.7
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-84 317.8 226 71.2
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 5.9e-75 285.8 211 67.3
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.8e-71 274.2 174 78.2
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 2.7e-64 250.4 192 64.1
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 6.3e-61 239.2 192 62.0
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 4.1e-60 236.5 406 37.9
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 2.7e-59 233.8 139 84.9
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 1.3e-58 231.5 124 83.1
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 4.2e-57 226.5 291 44.0
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.8e-47 194.5 134 73.1
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 1.5e-38 164.9 114 75.4
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 8.3e-37 159.1 113 76.1
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.6e-35 154.8 85 83.5
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 6.0e-35 152.9 122 63.1
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.0e-34 152.1 124 64.5
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 6.0e-27 126.3 77 83.1
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 3.6e-24 117.1 230 36.5
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 8.1e-24 115.9 86 68.6
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 1.9e-20 104.8 117 52.1
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 2.7e-19 100.9 60 91.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 1.5e-17 95.1 60 86.7
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 3.4e-14 84.0 48 81.2
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 4.4e-14 83.6 58 63.8
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 4.4e-14 83.6 68 60.3
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.7e-10 71.6 44 75.0
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 1.2e-06 58.9 220 25.0


User provided reference genes

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