Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0078900 Salix brachista HOM05D002690 ORTHO05D005709 2.3e-88 328.9 172 100.0
Sabra11G0073400 Salix brachista HOM05D002690 ORTHO05D005709 3.1e-77 292.0 159 95.6
Potri.001G357800 Populus trichocarpa HOM05D002690 ORTHO05D005709 2.1e-33 146.4 348 36.2
Sabra11G0079000 Salix brachista HOM05D002690 ORTHO05D005709 3.9e-32 142.1 87 90.8
Potri.011G089901 Populus trichocarpa HOM05D002690 ORTHO05D005709 1.0e-27 127.5 346 35.5
GSVIVG01021617001 Vitis vinifera HOM05D002690 ORTHO05D005709 1.5e-23 113.6 356 32.0
Nitab4.5_0011416g0020 Nicotiana tabacum HOM05D002690 ORTHO05D005709 1.9e-23 113.2 312 33.7
Cfa000832 Carpinus fangiana HOM05D002690 ORTHO05D005709 2.8e-22 109.4 353 31.2
Haze_05773 Corylus avellana HOM05D002690 ORTHO05D005709 4.8e-22 108.6 353 31.2
Dinv15926 Davidia involucrata HOM05D002690 ORTHO05D005709 3.1e-21 105.9 356 30.6
MELO3C022129.2 Cucumis melo HOM05D002690 ORTHO05D005709 2.6e-20 102.8 356 30.9
CsaV3_5G039520 Cucumis sativus L. HOM05D002690 ORTHO05D005709 2.6e-20 102.8 356 30.9
TPR.G30088 Trifolium pratense HOM05D002690 ORTHO05D005709 4.5e-20 102.1 358 29.1
arahy.Tifrunner.gnm1.ann1.9EB9RH Arachis hypogaea HOM05D002690 ORTHO05D005709 5.9e-20 101.7 355 30.1
arahy.Tifrunner.gnm1.ann1.XVC3D4 Arachis hypogaea HOM05D002690 ORTHO05D005709 5.9e-20 101.7 355 30.1
ClCG03G006290 Citrullus lanatus HOM05D002690 ORTHO05D005709 5.9e-20 101.7 356 31.7
Medtr2g029540 Medicago truncatula HOM05D002690 ORTHO05D005709 1.0e-19 100.9 362 30.1
Sed0021012 Sechium edule HOM05D002690 ORTHO05D005709 2.2e-19 99.8 356 30.3
CiPaw.09G115900 Carya illinoinensis HOM05D002690 ORTHO05D005709 5.0e-19 98.6 352 30.4
CsaV3_1G037380 Cucumis sativus L. HOM05D002690 ORTHO05D005709 6.5e-19 98.2 356 30.1
ClCG08G001630 Citrullus lanatus HOM05D002690 ORTHO05D005709 8.5e-19 97.8 357 30.0
BolC7t42017H Brassica oleracea HOM05D002690 ORTHO05D005709 1.1e-18 97.4 281 33.5
MELO3C002805.2 Cucumis melo HOM05D002690 ORTHO05D005709 1.1e-18 97.4 370 30.5
QL05p053241 Quercus lobata HOM05D002690 ORTHO05D005709 7.2e-18 94.7 84 67.9
CANSAT35G0839 Cannabis sativa HOM05D002690 ORTHO05D005709 2.7e-17 92.8 355 29.6
CiPaw.10G086100 Carya illinoinensis HOM05D002690 ORTHO05D005709 2.7e-17 92.8 353 30.3
MD05G1274200 Malus domestica HOM05D002690 ORTHO05D005709 3.6e-17 92.4 353 29.2
EL10Ac8g19577 Beta vulgaris HOM05D002690 ORTHO05D005709 6.1e-17 91.7 356 29.8
Ca_00801_v3 Cicer arietinum L. HOM05D002690 ORTHO05D005709 7.9e-17 91.3 366 29.5
Cfa000830 Carpinus fangiana HOM05D002690 ORTHO05D005709 1.8e-16 90.1 84 66.7
Sed0027591 Sechium edule HOM05D002690 ORTHO05D005709 2.3e-16 89.7 353 30.0
Nn3g20245 Nelumbo nucifera HOM05D002690 ORTHO05D005709 5.1e-16 88.6 86 65.1
Prupe.4G089500 Prunus persica HOM05D002690 ORTHO05D005709 6.7e-16 88.2 357 30.0
RcHm_v2.0_Chr5g0015861 Rosa chinensis HOM05D002690 ORTHO05D005709 1.1e-15 87.4 354 29.1
Nitab4.5_0001181g0060 Nicotiana tabacum HOM05D002690 ORTHO05D005709 1.5e-15 87.0 360 29.2
Lj6g0003051 Lotus japonicus HOM05D002690 ORTHO05D005709 4.4e-15 85.5 355 28.5
Thecc.02G012500 Theobroma cacao HOM05D002690 ORTHO05D005709 7.4e-15 84.7 353 30.3
FvH4_3g09980 Fragaria vesca HOM05D002690 ORTHO05D005709 9.7e-15 84.3 354 28.8
Sp1g26280 Schrenkiella parvula HOM05D002690 ORTHO05D005709 9.7e-15 84.3 338 27.2
TWI09G1166 Tripterygium wilfordii HOM05D002690 ORTHO05D005709 1.3e-14 84.0 364 28.8
FAN21G3939 Fragaria x ananassa HOM05D002690 ORTHO05D005709 1.7e-14 83.6 354 28.8
Solyc02g070240.3 Solanum lycopersicum HOM05D002690 ORTHO05D005709 1.7e-14 83.6 89 64.0
C07p15130 Brassica napus HOM05D002690 ORTHO05D005709 2.2e-14 83.2 82 61.0
DCAR_003862 Daucus carota HOM05D002690 ORTHO05D005709 2.8e-14 82.8 353 28.9
HanXRQChr15g0480931 Helianthus annuus HOM05D002690 ORTHO05D005709 2.8e-14 82.8 359 29.2
THA.LOC104798605 Tarenaya hassleriana HOM05D002690 ORTHO05D005709 2.8e-14 82.8 341 29.3
Peaxi162Scf00155g00068 Petunia axillaris HOM05D002690 ORTHO05D005709 4.8e-14 82.0 86 60.5
BcaC01g00193 Brassica carinata HOM05D002690 ORTHO05D005709 6.3e-14 81.6 286 30.4
Carub.0001s2865 Capsella rubella HOM05D002690 ORTHO05D005709 6.3e-14 81.6 343 28.6
MD10G1253900 Malus domestica HOM05D002690 ORTHO05D005709 6.3e-14 81.6 356 29.8
AL1G44410 Arabidopsis lyrata HOM05D002690 ORTHO05D005709 8.2e-14 81.3 341 28.4
CAN.G660.45 Capsicum annuum HOM05D002690 ORTHO05D005709 8.2e-14 81.3 88 64.8
FAN11G1563 Fragaria x ananassa HOM05D002690 ORTHO05D005709 8.2e-14 81.3 132 40.9
Hund26562 Selenicereus undatus HOM05D002690 ORTHO05D005709 8.2e-14 81.3 357 27.7
Glyma.15G128500 Glycine max HOM05D002690 ORTHO05D005709 1.1e-13 80.9 356 29.2
Gorai.008G046800 Gossypium raimondii HOM05D002690 ORTHO05D005709 1.1e-13 80.9 361 29.6
Atru.chr10.891 Acer truncatum HOM05D002690 ORTHO05D005709 1.8e-13 80.1 358 29.3
Aa31LG10G6630 Aethionema arabicum HOM05D002690 ORTHO05D005709 1.8e-13 80.1 342 28.4
DCAR_007846 Daucus carota HOM05D002690 ORTHO05D005709 2.4e-13 79.7 85 63.5
Duzib132G0834 Durio zibethinus HOM05D002690 ORTHO05D005709 2.4e-13 79.7 392 28.6
Actinidia31389 Actinidia chinensis HOM05D001466 ORTHO05D005709 3.1e-13 79.3 359 29.0
MSTRG.16286 Avicennia marina HOM05D002690 ORTHO05D005709 3.1e-13 79.3 80 66.2
Actinidia32368 Actinidia chinensis HOM05D002690 ORTHO05D005709 4.1e-13 79.0 360 28.9
BcaNung05261 Brassica carinata HOM05D002690 ORTHO05D005709 4.1e-13 79.0 82 63.4
AT1G30460 Arabidopsis thaliana HOM05D002690 ORTHO05D005709 5.3e-13 78.6 341 28.7
FAN16G3174 Fragaria x ananassa HOM05D002690 ORTHO05D005709 5.3e-13 78.6 132 40.2
Eucgr.E02496 Eucalyptus grandis HOM05D002690 ORTHO05D005709 6.9e-13 78.2 87 60.9
FAN25G1940 Fragaria x ananassa HOM05D002690 ORTHO05D005709 6.9e-13 78.2 392 26.5
Glyma.09G022200 Glycine max HOM05D002690 ORTHO05D005709 6.9e-13 78.2 356 28.7
Manes.14G122500 Manihot esculenta HOM05D002690 ORTHO05D005709 6.9e-13 78.2 373 29.5
TAR626G1080 Trochodendron aralioides HOM05D002690 ORTHO05D005709 6.9e-13 78.2 361 28.0
Gohir.D12G044500 Gossypium hirsutum HOM05D002690 ORTHO05D005709 9.1e-13 77.8 358 29.3
MBI18_g10583_MAGBIO Magnolia biondii HOM05D002690 ORTHO05D005709 9.1e-13 77.8 86 64.0
Lalb_Chr18g0057871 Lupinus albus HOM05D002690 ORTHO05D005709 1.2e-12 77.4 356 28.4
Sabra16G0235600 Salix brachista HOM05D002690 ORTHO05D005709 1.2e-12 77.4 84 56.0
VMungo0540G2147 Vigna mungo HOM05D002690 ORTHO05D005709 1.2e-12 77.4 356 27.8
CARHR029850 Cardamine hirsuta HOM05D002690 ORTHO05D005709 2.0e-12 76.6 84 57.1
Ciclev10014454m.g Citrus clementina HOM05D002690 ORTHO05D005709 2.6e-12 76.3 356 28.9
PGR031G1950 Punica granatum HOM05D002690 ORTHO05D005709 2.6e-12 76.3 361 28.5
SalBow7G2713 Salvia bowleyana HOM05D002690 ORTHO05D005709 5.9e-12 75.1 84 60.7
Sc24g0001450 Simmondsia chinensis HOM05D002690 ORTHO05D005709 5.9e-12 75.1 356 26.4
Oeu060303.1 Olea europaea HOM05D002690 ORTHO05D005709 7.7e-12 74.7 353 29.5
Migut.H01337 Erythranthe guttata HOM05D002690 ORTHO05D005709 1.0e-11 74.3 92 59.8
Thhalv10007064m.g Eutrema salsugineum HOM05D002690 ORTHO05D005709 1.0e-11 74.3 343 27.7
Lalb_Chr15g0088721 Lupinus albus HOM05D002690 ORTHO05D005709 1.3e-11 73.9 356 28.4
unitig_0.g927 Utricularia gibba HOM05D002690 ORTHO05D005709 1.3e-11 73.9 350 26.6
Gohir.A12G045500 Gossypium hirsutum HOM05D002690 ORTHO05D005709 1.7e-11 73.6 357 28.9
Sopen02g019330 Solanum pennellii HOM05D002690 ORTHO05D005709 1.7e-11 73.6 89 62.9
ECA236G0560 Erigeron canadensis HOM05D002690 ORTHO05D005709 2.2e-11 73.2 87 64.4
Psat1g168520 Pisum sativum HOM05D002690 ORTHO05D005709 2.2e-11 73.2 356 28.1
A08p24440 Brassica napus HOM05D002690 ORTHO05D005709 5.0e-11 72.0 82 59.8
C03p76770 Brassica napus HOM05D002690 ORTHO05D005709 5.0e-11 72.0 82 59.8
BolC3t19931H Brassica oleracea HOM05D002690 ORTHO05D005709 5.0e-11 72.0 82 59.8
BraA08t34399Z Brassica rapa HOM05D002690 ORTHO05D005709 5.0e-11 72.0 82 59.8
BraA07t28782Z Brassica rapa HOM05D002690 ORTHO05D005709 6.5e-11 71.6 82 57.3
Cpa.g.c34894 Carica papaya HOM05D002690 ORTHO05D005709 8.5e-11 71.2 84 60.7
Cpa.g.sc17.104 Carica papaya HOM05D002690 ORTHO05D005709 8.5e-11 71.2 142 35.9
Phvul.006G130200 Phaseolus vulgaris HOM05D002690 ORTHO05D005709 8.5e-11 71.2 361 27.4
SGA_v2.0_scaffold51G18649 Striga asiatica HOM05D002690 ORTHO05D005709 1.4e-10 70.5 124 38.7
Ah.14g086150 Amaranthus hybridus HOM05D002690 ORTHO05D005709 2.5e-10 69.7 356 25.8
AUR62042032 Chenopodium quinoa HOM05D002690 ORTHO05D005709 5.5e-10 68.6 126 37.3
Rhsim13G0120100 Rhododendron simsii HOM05D002690 ORTHO05D005709 9.4e-10 67.8 128 39.1
A07p09930 Brassica napus HOM05D002690 ORTHO05D005709 1.6e-09 67.0 82 57.3
CSS0024768 Camellia sinensis var. sinensis HOM05D002690 ORTHO05D005709 2.1e-09 66.6 88 59.1
DCAR_007847 Daucus carota HOM05D002690 ORTHO05D005709 4.7e-09 65.5 83 43.4
Lsat_1_v5_gn_7_29481 Lactuca sativa HOM05D002690 ORTHO05D005709 8.0e-09 64.7 28 89.3
Oeu058474.2 Olea europaea HOM05D002690 ORTHO05D005709 8.0e-09 64.7 28 89.3
ATR0165G057 Amborella trichopoda HOM05D002690 ORTHO05D005709 1.0e-08 64.3 28 89.3
Nitab4.5_0000100g0020 Nicotiana tabacum HOM05D002690 ORTHO05D005709 1.0e-08 64.3 86 55.8
Nitab4.5_0000607g0100 Nicotiana tabacum HOM05D002690 ORTHO05D005709 1.0e-08 64.3 86 55.8
PSO541G0016 Papaver somniferum HOM05D002690 ORTHO05D005709 1.0e-08 64.3 28 89.3
PSO675G8993 Papaver somniferum HOM05D002690 ORTHO05D005709 1.0e-08 64.3 28 89.3
vmacro03397 Vaccinium macrocarpon HOM05D002690 ORTHO05D005709 1.0e-08 64.3 28 89.3
Aqoxy1G01608 Aquilegia oxysepala HOM05D002690 ORTHO05D005709 1.8e-08 63.5 127 37.0
AUR62042460 Chenopodium quinoa HOM05D002690 ORTHO05D005709 1.8e-08 63.5 168 32.7
Solyc02g021760.3 Solanum lycopersicum HOM05D002690 ORTHO05D005709 1.8e-08 63.5 28 85.7
Sopen02g006300 Solanum pennellii HOM05D002690 ORTHO05D005709 1.8e-08 63.5 28 85.7
HPP92_016574 Vanilla planifolia HOM05D002690 ORTHO05D005709 2.3e-08 63.2 82 56.1
ECA234G2820 Erigeron canadensis HOM05D002690 ORTHO05D005709 3.0e-08 62.8 46 60.9
Lsat_1_v5_gn_4_29061 Lactuca sativa HOM05D002690 ORTHO05D005709 3.0e-08 62.8 27 88.9
COL.COLO4_17684 Corchorus olitorius HOM05D002690 ORTHO05D005709 3.9e-08 62.4 90 40.0
Mapoly0056s0030 Marchantia polymorpha HOM05D002690 ORTHO05D005709 3.9e-08 62.4 29 79.3
Migut.M01886 Erythranthe guttata HOM05D002690 ORTHO05D005709 5.2e-08 62.0 163 35.6
PGSC0003DMG400021104 Solanum tuberosum HOM05D002690 ORTHO05D005709 5.2e-08 62.0 24 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4357 Anthoceros agrestis HOM05D002690 ORTHO05D005709 6.7e-08 61.6 54 51.9
Manes.06G055600 Manihot esculenta HOM05D002690 ORTHO05D005709 6.7e-08 61.6 28 85.7
TAR627G0656 Trochodendron aralioides HOM05D002690 ORTHO05D005709 6.7e-08 61.6 28 85.7
BraA08t34401Z Brassica rapa HOM05D002690 ORTHO05D005709 1.1e-07 60.8 37 81.1
CDE04G1060 Ceratophyllum demersum HOM05D002690 ORTHO05D005709 1.5e-07 60.5 28 82.1
CDE12G0823 Ceratophyllum demersum HOM05D002690 ORTHO05D005709 1.5e-07 60.5 28 82.1
Lj2C328G3 Lonicera japonica HOM05D002690 ORTHO05D005709 1.5e-07 60.5 89 46.1
unitig_61.g26082 Utricularia gibba HOM05D002690 ORTHO05D005709 2.6e-07 59.7 88 37.5
Pp3c20_9290 Physcomitrium patens HOM05D002690 ORTHO05D005709 3.3e-07 59.3 85 40.0
SHI20685 Sapria himalayana HOM05D000105 ORTHO05D000023 3.3e-07 59.3 82 53.7
Zm00001eb224690 Zea mays HOM05D002690 ORTHO05D005709 3.3e-07 59.3 66 43.9
Os06g0677700 Oryza sativa ssp. japonica HOM05D002690 ORTHO05D005709 4.4e-07 58.9 28 75.0
SEGI_22079 Sequoiadendron giganteum HOM05D002690 ORTHO05D005709 4.4e-07 58.9 28 78.6
Zm00001eb273850 Zea mays HOM05D002690 ORTHO05D005709 1.7e-06 57.0 81 40.7
HPP92_015677 Vanilla planifolia HOM05D002690 ORTHO05D005709 6.3e-06 55.1 28 71.4


User provided reference genes

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