Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0121700 Salix brachista HOM05D001577 ORTHO05D348997 2.6e-39 164.9 78 100.0
Potri.008G094100 Populus trichocarpa HOM05D001577 ORTHO05D008017 2.9e-14 81.6 58 75.9
Sabra08G0070600 Salix brachista HOM05D001577 ORTHO05D008017 8.3e-14 80.1 47 83.0
Peaxi162Scf00314g00229 Petunia axillaris HOM05D001577 ORTHO05D008017 1.6e-09 65.9 49 65.3
Thecc.02G333200 Theobroma cacao HOM05D001577 ORTHO05D008017 3.6e-09 64.7 44 68.2
Phvul.003G043500 Phaseolus vulgaris HOM05D001577 ORTHO05D008017 8.0e-09 63.5 47 66.0
Lalb_Chr17g0341141 Lupinus albus HOM05D001577 ORTHO05D008017 1.0e-08 63.2 50 66.0
Psat2g129880 Pisum sativum HOM05D001577 ORTHO05D008017 1.4e-08 62.8 49 63.3
arahy.Tifrunner.gnm1.ann1.PLIZ5P Arachis hypogaea HOM05D001577 ORTHO05D008017 1.8e-08 62.4 43 72.1
arahy.Tifrunner.gnm1.ann1.KUI669 Arachis hypogaea HOM05D001577 ORTHO05D008017 2.3e-08 62.0 58 55.2
Ca_04912_v3 Cicer arietinum L. HOM05D001577 ORTHO05D008017 2.3e-08 62.0 43 72.1
Rhsim12G0135500 Rhododendron simsii HOM05D001577 ORTHO05D008017 2.3e-08 62.0 47 61.7
Glyma.01G057400 Glycine max HOM05D001577 ORTHO05D008017 3.1e-08 61.6 42 71.4
VMungo1215G1701 Vigna mungo HOM05D001577 ORTHO05D008017 3.1e-08 61.6 58 56.9
Atru.chr11.1656 Acer truncatum HOM05D001577 ORTHO05D008017 4.0e-08 61.2 43 67.4
Lj2g0027225 Lotus japonicus HOM05D001577 ORTHO05D008017 4.0e-08 61.2 43 72.1
Duzib268G1720 Durio zibethinus HOM05D001577 ORTHO05D008017 5.2e-08 60.8 57 57.9
QL03p071314 Quercus lobata HOM05D001577 ORTHO05D008017 6.8e-08 60.5 43 67.4
CSS0014813 Camellia sinensis var. sinensis HOM05D001577 ORTHO05D008017 8.9e-08 60.1 42 66.7
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 8.9e-08 60.1 42 66.7
Ciclev10031871m.g Citrus clementina HOM05D001577 ORTHO05D008017 1.2e-07 59.7 42 66.7
EL10Ac6g14990 Beta vulgaris HOM05D001577 ORTHO05D008017 1.5e-07 59.3 39 69.2
CAN.G616.10 Capsicum annuum HOM05D001577 ORTHO05D008017 1.5e-07 59.3 41 68.3
PGSC0003DMG400028379 Solanum tuberosum HOM05D001577 ORTHO05D008017 1.5e-07 59.3 41 68.3
Nitab4.5_0002362g0080 Nicotiana tabacum HOM05D001577 ORTHO05D008017 2.0e-07 58.9 41 68.3
TPR.G24431 Trifolium pratense HOM05D001577 ORTHO05D008017 2.0e-07 58.9 43 67.4
CiPaw.05G126300 Carya illinoinensis HOM05D001577 ORTHO05D008017 2.6e-07 58.5 43 65.1
Medtr5g044050 Medicago truncatula HOM05D001577 ORTHO05D008017 2.6e-07 58.5 43 67.4
Gohir.D13G081200 Gossypium hirsutum HOM05D001577 ORTHO05D008017 3.4e-07 58.2 39 66.7
Gorai.013G093200 Gossypium raimondii HOM05D001577 ORTHO05D008017 3.4e-07 58.2 39 66.7
Solyc05g012460.4 Solanum lycopersicum HOM05D001577 ORTHO05D008017 3.4e-07 58.2 56 58.9
Sopen05g007280 Solanum pennellii HOM05D001577 ORTHO05D008017 3.4e-07 58.2 56 58.9
Nitab4.5_0008450g0010 Nicotiana tabacum HOM05D001577 ORTHO05D008017 4.4e-07 57.8 41 68.3
Duzib251G0509 Durio zibethinus HOM05D001577 ORTHO05D008017 5.8e-07 57.4 42 64.3
RcHm_v2.0_Chr4g0438581 Rosa chinensis HOM05D001577 ORTHO05D008017 5.8e-07 57.4 43 65.1
vmacro16379 Vaccinium macrocarpon HOM05D001577 ORTHO05D008017 5.8e-07 57.4 47 57.4
CAN.G899.4 Capsicum annuum HOM05D001577 ORTHO05D008017 7.5e-07 57.0 40 67.5
AUR62003116 Chenopodium quinoa HOM05D001577 ORTHO05D008017 7.5e-07 57.0 38 68.4
Hma1.2p1_0357F.1_g134556 Hydrangea macrophylla HOM05D001577 ORTHO05D008017 7.5e-07 57.0 42 64.3
Hma1.2p1_0357F.1_g134560 Hydrangea macrophylla HOM05D001577 ORTHO05D008017 7.5e-07 57.0 42 64.3
Hma1.2p1_0357F.1_g134578 Hydrangea macrophylla HOM05D001577 ORTHO05D008017 7.5e-07 57.0 42 64.3
Hma1.2p1_0357F.1_g134580 Hydrangea macrophylla HOM05D001577 ORTHO05D008017 7.5e-07 57.0 42 64.3
Hma1.2p1_0357F.1_g134590 Hydrangea macrophylla HOM05D001577 ORTHO05D008017 7.5e-07 57.0 42 64.3
Hma1.2p1_0357F.1_g134593 Hydrangea macrophylla HOM05D001577 ORTHO05D008017 7.5e-07 57.0 42 64.3
Hma1.2p1_0357F.1_g134596 Hydrangea macrophylla HOM05D001577 ORTHO05D008017 7.5e-07 57.0 42 64.3
Hma1.2p1_0357F.1_g134606 Hydrangea macrophylla HOM05D001577 ORTHO05D008017 7.5e-07 57.0 42 64.3
ECA233G1705 Erigeron canadensis HOM05D001577 ORTHO05D008017 9.8e-07 56.6 42 61.9
TWI79G1059 Tripterygium wilfordii HOM05D001577 ORTHO05D008017 9.8e-07 56.6 42 64.3
Cpa.g.sc1.111 Carica papaya HOM05D001577 ORTHO05D008017 1.3e-06 56.2 41 63.4
Manes.01G028800 Manihot esculenta HOM05D001577 ORTHO05D008017 1.3e-06 56.2 38 68.4
Ah.03g139010 Amaranthus hybridus HOM05D001577 ORTHO05D008017 1.7e-06 55.8 38 68.4
AL1G39210 Arabidopsis lyrata HOM05D001577 ORTHO05D008017 1.7e-06 55.8 42 66.7
AL1G41080 Arabidopsis lyrata HOM05D001577 ORTHO05D008017 1.7e-06 55.8 42 66.7
AT1G26520 Arabidopsis thaliana HOM05D001577 ORTHO05D008017 1.7e-06 55.8 42 66.7
Carub.0001s2451 Capsella rubella HOM05D001577 ORTHO05D008017 1.7e-06 55.8 42 66.7
AUR62007932 Chenopodium quinoa HOM05D001577 ORTHO05D008017 1.7e-06 55.8 38 65.8
Thhalv10007454m.g Eutrema salsugineum HOM05D001577 ORTHO05D008017 1.7e-06 55.8 42 66.7
SGA_v2.0_scaffold287G47164 Striga asiatica HOM05D001577 ORTHO05D008017 1.7e-06 55.8 46 56.5
Sp1g22240 Schrenkiella parvula HOM05D001577 ORTHO05D008017 2.2e-06 55.5 42 64.3
Lj6A780T51 Lonicera japonica HOM05D001577 ORTHO05D008017 2.9e-06 55.1 38 68.4
CANSAT64G2351 Cannabis sativa HOM05D001577 ORTHO05D008017 3.7e-06 54.7 43 60.5
CARHR025450 Cardamine hirsuta HOM05D001577 ORTHO05D008017 3.7e-06 54.7 42 64.3
Cfa008888 Carpinus fangiana HOM05D001577 ORTHO05D008017 3.7e-06 54.7 43 58.1
Hma1.2p1_0357F.1_g134553 Hydrangea macrophylla HOM05D001577 ORTHO05D008017 3.7e-06 54.7 42 61.9
unitig_27.g25218 Utricularia gibba HOM05D001577 ORTHO05D008017 3.7e-06 54.7 47 57.4
Cc11_g12160 Coffea canephora HOM05D001577 ORTHO05D008017 4.9e-06 54.3 57 50.9
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 4.9e-06 54.3 41 63.4
Lsat_1_v5_gn_3_56300 Lactuca sativa HOM05D001577 ORTHO05D008017 4.9e-06 54.3 42 57.1
TAR374G0575 Trochodendron aralioides HOM05D001577 ORTHO05D008017 4.9e-06 54.3 42 59.5
A09p39920 Brassica napus HOM05D001577 ORTHO05D008017 6.4e-06 53.9 42 64.3
BraA09t39491Z Brassica rapa HOM05D001577 ORTHO05D008017 6.4e-06 53.9 42 64.3
Migut.E00053 Erythranthe guttata HOM05D001577 ORTHO05D008017 6.4e-06 53.9 42 59.5
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 8.3e-06 53.5 43 60.5
SalBow6G1643 Salvia bowleyana HOM05D001577 ORTHO05D008017 8.3e-06 53.5 45 57.8


User provided reference genes

Program Settings