Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1901.7 966 100.0
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1778.1 974 93.1
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1606.3 974 85.2
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1587.8 983 83.2
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1582.4 980 83.1
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1580.5 982 82.4
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1573.1 969 82.6
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1570.4 975 82.6
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1568.9 938 85.2
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1567.4 980 82.6
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1565.4 984 82.3
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1564.7 994 81.7
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1562.0 965 82.6
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1561.6 982 82.4
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1561.6 985 81.8
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1561.2 981 81.8
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1560.8 926 85.6
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1559.3 1001 80.7
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 969 83.2
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1555.0 977 82.4
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1553.5 982 81.9
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1553.1 969 82.1
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1552.7 975 82.3
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1546.9 895 86.8
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1543.9 950 82.6
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1541.2 950 82.7
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1539.6 982 80.7
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1538.1 902 85.7
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1536.5 979 80.6
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 986 80.7
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 991 79.1
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1528.8 975 79.6
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1528.8 875 86.2
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1528.5 874 87.5
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1528.1 974 80.6
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1525.0 902 85.4
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 977 79.8
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 974 80.0
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1519.2 882 85.3
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 869 86.3
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1517.3 975 79.9
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1515.4 978 79.2
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1515.0 958 81.0
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1514.2 974 79.5
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1512.7 905 85.0
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1512.7 947 80.8
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1510.7 974 79.9
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 876 85.4
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1508.0 977 79.0
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 948 80.3
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 981 79.3
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1506.1 882 85.1
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1505.3 870 85.3
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1503.4 956 80.5
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1502.6 977 79.1
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1501.1 987 78.3
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1500.3 905 83.2
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1499.6 987 78.2
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1499.6 987 78.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 904 83.4
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 1009 77.4
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 872 85.8
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1493.0 952 80.0
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1492.2 939 81.2
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1492.2 866 85.0
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 874 84.8
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 986 77.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 953 79.5
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1488.8 858 86.2
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1488.0 845 87.3
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 852 86.7
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1484.9 957 79.2
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1484.2 874 84.4
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 944 80.4
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 938 81.8
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 970 77.7
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 970 77.7
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 894 83.0
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 950 78.8
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1478.0 957 78.6
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1477.6 883 83.5
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1477.2 874 83.9
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 852 86.3
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 844 87.1
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1474.9 874 82.7
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1474.5 957 78.3
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1474.5 889 82.6
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 886 83.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1469.5 874 84.0
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 957 78.2
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1468.4 916 79.8
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1468.0 957 78.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1468.0 957 78.1
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 946 77.8
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 948 77.4
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 873 83.3
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1461.0 858 84.5
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1458.0 874 83.1
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1456.4 943 78.2
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1455.7 843 85.8
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 873 82.8
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1446.8 892 80.8
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1444.9 891 80.5
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1444.1 858 83.6
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1444.1 884 80.5
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1442.9 880 80.9
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1432.2 1102 70.2
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 875 82.1
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1423.3 939 78.4
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1411.7 844 81.8
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1407.9 897 77.5
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1397.5 874 80.5
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1389.4 868 80.4
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1380.9 909 75.4
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1370.9 860 79.1
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1363.2 872 76.6
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1357.0 872 79.1
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1355.9 888 75.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1350.5 774 86.8
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1348.6 823 80.8
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1347.8 892 76.6
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1337.8 803 81.4
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1324.7 874 77.2
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1315.1 872 78.0
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1308.1 803 82.3
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1291.2 887 77.3
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1276.5 867 75.5
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1275.4 801 81.1
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1214.1 779 78.6
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1207.2 730 81.6
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1205.7 871 70.5
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1176.4 857 67.9
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1174.8 876 67.0
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 5.0e-310 1067.8 633 83.7
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 2.6e-298 1028.9 883 59.3
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.8e-291 1006.1 581 85.4
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 3.2e-272 942.2 569 81.9
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 7.3e-253 877.9 908 53.2
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.3e-217 760.8 551 72.1
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.2e-216 755.0 453 82.6
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.0e-214 751.1 497 77.9
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.5e-193 678.7 443 78.6
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 3.0e-190 669.8 404 82.2
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 4.5e-178 629.4 744 48.5
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 7.8e-162 575.5 459 66.4
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 4.6e-154 549.7 338 81.7
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 2.8e-135 487.3 383 66.3
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 5.4e-131 473.0 296 81.1
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.4e-110 405.2 415 54.7
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 5.3e-102 376.7 313 64.9
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 5.9e-93 346.7 232 75.4
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 2.0e-85 321.6 257 65.8
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-64 252.7 219 63.9
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 4.5e-61 240.7 213 61.0
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 5.8e-56 223.8 151 72.2
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.6e-50 205.7 119 81.5
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-42 179.1 268 42.9
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 4.6e-37 161.0 112 70.5
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.0e-32 145.6 85 82.4
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.4e-30 138.7 81 82.7
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 7.1e-30 137.1 83 79.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.6e-28 130.6 96 69.8
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.7e-23 115.9 446 28.0
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.4e-22 112.1 130 50.8
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.1e-21 109.0 90 65.6
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 8.7e-20 103.6 56 80.4
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 3.4e-16 91.7 60 70.0
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-10 73.2 51 68.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-10 72.8 49 71.4
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 6.2e-10 70.9 43 74.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.2e-08 66.6 119 39.5
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 4.5e-08 64.7 43 69.8
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 5.8e-08 64.3 68 55.9
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.3e-07 63.2 40 77.5
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.7e-07 62.8 49 65.3


User provided reference genes

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