Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1325.1 642 100.0
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1208.7 599 97.0
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1200.3 636 92.6
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 625 91.5
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 627 91.1
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 633 88.9
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1167.1 597 93.3
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 602 91.4
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 631 88.1
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1160.2 603 92.0
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 597 92.6
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1158.7 634 88.0
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1157.5 599 92.0
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 599 92.0
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 598 92.0
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 600 91.3
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 602 90.9
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 632 88.1
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 602 91.4
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 602 91.5
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1154.4 639 87.2
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 635 87.4
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 630 87.9
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 630 87.5
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 639 87.2
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 632 88.0
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1152.1 601 91.2
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 634 87.5
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 600 91.2
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 601 90.8
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 602 90.5
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1147.9 602 90.7
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1147.9 631 87.8
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1146.3 595 91.8
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 598 91.6
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 633 87.8
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1145.2 623 88.3
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1145.2 631 87.2
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1145.2 631 87.0
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 636 86.6
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 602 89.9
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1140.6 633 87.5
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 637 86.2
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 631 87.6
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 631 86.5
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 622 88.3
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1138.6 597 90.8
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 632 87.0
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 630 86.8
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1137.1 630 87.1
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1136.3 637 85.7
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1136.3 593 91.2
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1136.3 598 89.8
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 594 90.7
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1134.8 599 90.8
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 591 91.0
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 594 90.1
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1134.0 623 87.8
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1134.0 623 87.8
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1134.0 630 87.0
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1133.2 592 90.5
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1132.9 595 90.1
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1131.3 590 91.0
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 623 87.6
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 597 90.3
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1130.2 593 90.6
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 623 87.5
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 623 87.5
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 594 90.1
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1129.0 588 90.8
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1128.6 620 87.9
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1127.9 628 86.6
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1127.9 593 90.2
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1127.5 625 86.4
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1127.1 616 87.8
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1127.1 594 89.4
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1127.1 589 90.3
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1126.3 588 91.0
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1126.3 589 90.7
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1125.5 625 87.0
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1125.2 592 89.7
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1124.8 594 89.2
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1122.5 603 88.4
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1122.5 595 89.2
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1122.5 595 89.2
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1119.4 594 89.1
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1117.4 595 88.9
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1116.7 601 89.0
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1114.4 595 89.4
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1114.4 583 90.2
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1113.6 628 85.2
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1113.2 598 89.0
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1108.6 581 89.8
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1107.4 594 89.1
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1106.7 587 89.1
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1105.5 596 88.4
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1105.1 596 88.3
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1102.0 593 88.4
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1097.0 574 89.2
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 2.5e-310 1068.1 632 83.2
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 9.7e-310 1066.2 595 85.9
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 4.1e-308 1060.8 597 83.4
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 9.4e-305 1049.7 546 91.4
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 2.4e-300 1035.0 589 83.2
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 2.0e-299 1031.9 543 89.0
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 7.7e-299 1030.0 584 83.2
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 6.5e-298 1026.9 592 81.9
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 4.2e-297 1024.2 627 79.9
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 5.5e-297 1023.8 630 80.3
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.0e-295 1019.6 577 83.0
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.5e-289 999.2 568 82.4
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 5.2e-287 990.7 553 83.7
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 4.7e-280 967.6 563 84.4
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 2.5e-249 865.5 474 85.7
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 3.1e-231 805.4 513 74.5
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 3.7e-208 728.8 372 94.9
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 4.5e-190 668.7 581 59.0
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 3.1e-183 646.0 345 88.4
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 1.1e-148 531.2 267 94.8
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 7.8e-126 455.3 557 46.9
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 6.9e-74 282.7 225 60.4
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.1e-68 265.4 125 95.2
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 3.6e-46 190.7 104 82.7
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 9.1e-42 176.0 97 85.6
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 3.7e-35 154.1 150 56.7
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 4.9e-35 153.7 95 77.9
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.9e-19 100.5 53 88.7
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 5.4e-18 97.1 53 86.8
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 3.9e-08 64.3 32 90.6


User provided reference genes

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