Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 8.0e-164 580.5 320 100.0
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 4.9e-145 518.1 319 90.9
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.4e-136 490.0 294 91.8
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.1e-125 453.8 296 87.5
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.4e-123 446.0 321 80.7
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.2e-122 443.7 321 81.3
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 5.6e-117 424.9 327 77.1
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.2e-116 421.4 293 82.6
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 1.8e-115 419.9 308 79.9
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 3.1e-115 419.1 319 77.4
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 4.0e-115 418.7 306 80.4
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.3e-113 413.7 302 80.1
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.9e-113 411.8 302 79.8
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 5.5e-112 408.3 316 76.9
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 1.2e-111 407.1 309 78.3
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 7.9e-111 404.4 316 75.3
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 1.0e-110 404.1 303 76.9
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 1.3e-110 403.7 298 79.5
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 3.9e-110 402.1 323 75.5
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 4.3e-109 398.7 311 77.5
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.4e-107 393.7 309 75.1
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 2.4e-107 392.9 294 78.6
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 4.0e-107 392.1 292 77.1
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 4.5e-106 388.7 309 71.8
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 2.2e-105 386.3 312 75.0
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 1.1e-104 384.0 311 76.2
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.4e-104 383.6 306 74.2
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 1.9e-104 383.3 311 74.9
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.6e-103 380.2 313 72.8
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 2.1e-103 379.8 312 74.0
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.5e-103 379.0 291 77.7
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.0e-103 378.3 295 76.6
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.8e-102 376.7 313 73.8
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.3e-102 376.3 301 73.8
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 3.0e-102 375.9 298 74.5
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 5.1e-102 375.2 300 74.7
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.6e-100 370.2 313 74.1
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 2.8e-100 369.4 336 68.2
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 6.3e-100 368.2 317 71.9
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.4e-99 367.1 348 67.0
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 4.1e-99 365.5 311 72.3
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 1.2e-98 364.0 277 76.2
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 4.5e-98 362.1 317 70.0
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 5.9e-98 361.7 308 71.4
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-96 357.5 313 71.2
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.4e-96 357.1 266 77.1
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 3.6e-95 352.4 311 69.8
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.9e-93 346.7 292 69.9
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 3.3e-93 345.9 318 69.5
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.6e-92 343.6 309 66.7
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.4e-91 339.7 303 69.3
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 3.1e-91 339.3 309 65.7
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 4.1e-91 339.0 291 71.1
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 2.0e-90 336.7 296 70.6
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 3.4e-90 335.9 312 68.6
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.3e-89 334.0 313 69.0
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 2.9e-89 332.8 311 66.6
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 5.0e-89 332.0 308 65.6
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 8.5e-89 331.3 318 67.6
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.1e-88 330.9 319 67.7
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.4e-88 330.5 306 66.0
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.9e-88 330.1 310 65.2
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 3.6e-87 325.9 314 66.9
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.0e-86 324.3 242 78.1
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.8e-86 323.6 309 66.7
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 5.1e-86 322.0 319 64.6
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 1.5e-85 320.5 314 67.2
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 2.0e-85 320.1 318 62.9
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 9.7e-85 317.8 327 64.8
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 9.7e-85 317.8 311 64.3
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 2.8e-84 316.2 311 64.0
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.4e-83 313.9 301 63.5
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 2.4e-83 313.2 310 65.8
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 6.9e-83 311.6 306 66.3
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 9.1e-83 311.2 300 62.7
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.2e-82 310.8 306 63.7
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 5.9e-82 308.5 300 64.0
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 1.3e-81 307.4 264 71.6
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 4.2e-80 302.4 305 61.6
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 7.2e-80 301.6 300 61.7
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 9.4e-80 301.2 309 60.8
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 3.0e-78 296.2 309 62.5
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 6.7e-78 295.0 304 61.2
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 8.8e-78 294.7 294 66.0
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-77 294.3 280 65.4
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-77 294.3 280 65.4
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 7.4e-77 291.6 297 61.6
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.4e-75 287.3 280 64.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 1.7e-73 280.4 306 58.5
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 3.8e-73 279.3 306 58.2
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 6.5e-73 278.5 308 58.8
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 6.5e-73 278.5 306 58.2
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 2.5e-72 276.6 293 59.7
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 7.2e-72 275.0 309 58.9
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.6e-71 272.7 226 71.7
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 4.7e-71 272.3 214 71.5
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 8.0e-71 271.6 302 58.6
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.0e-70 269.6 300 58.0
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 6.7e-70 268.5 217 71.4
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.2e-69 267.7 309 57.9
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 3.3e-69 266.2 309 57.6
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 4.4e-69 265.8 312 58.7
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 5.3e-67 258.8 319 56.7
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.2e-66 257.7 317 55.2
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.2e-66 257.7 317 55.2
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 4.5e-66 255.8 231 64.9
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 5.9e-66 255.4 318 53.8
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.3e-65 254.2 319 52.4
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 3.8e-65 252.7 203 70.0
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 8.5e-65 251.5 192 74.5
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 6.1e-63 245.4 210 66.7
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 6.1e-63 245.4 210 66.7
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 1.4e-62 244.2 317 52.1
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 6.8e-62 241.9 201 67.2
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 2.0e-61 240.4 255 59.2
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 3.4e-61 239.6 257 59.9
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 9.1e-59 231.5 242 58.7
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.6e-55 219.5 249 55.4
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 5.2e-54 215.7 223 59.2
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.5e-53 214.2 335 46.6
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 2.2e-52 210.3 302 49.7
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 3.1e-51 206.5 326 50.0
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 3.1e-51 206.5 211 60.2
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.9e-48 197.2 312 47.1
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.2e-47 194.5 236 53.0
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 1.2e-47 194.5 236 53.0
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.0e-47 191.8 166 66.9
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 6.8e-46 188.7 310 46.8
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 2.6e-45 186.8 300 49.0
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 8.3e-44 181.8 271 49.4
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 4.1e-43 179.5 151 72.2
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.9e-40 170.6 175 59.4
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 5.6e-40 169.1 150 68.7
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 3.7e-28 129.8 142 61.3
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 3.3e-24 116.7 136 52.2
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 4.4e-21 106.3 98 66.3
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.6e-18 97.8 166 41.6
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 2.1e-15 87.4 88 59.1
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.2e-10 71.6 61 68.9
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 1.3e-09 68.2 72 58.3
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.3e-09 67.4 57 68.4
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 6.6e-09 65.9 59 66.1
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 6.6e-09 65.9 57 68.4
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 1.1e-08 65.1 57 66.7
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 2.5e-08 63.9 210 29.5
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.3e-08 63.5 86 55.8
Gohir.D03G068600 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.6e-08 62.8 57 64.9
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 9.6e-08 62.0 172 33.1


User provided reference genes

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