Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0078500 Salix brachista HOM05D006035 ORTHO05D007155 1.8e-93 345.9 174 100.0
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 1.4e-77 293.1 174 85.1
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 3.9e-72 275.0 174 79.9
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 3.7e-70 268.5 174 78.7
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 3.2e-50 202.2 168 64.9
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 1.0e-48 197.2 171 63.2
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 1.5e-47 193.4 170 62.4
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 2.0e-47 193.0 168 63.7
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 2.6e-44 182.6 169 60.9
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 4.5e-44 181.8 170 59.4
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 1.7e-43 179.9 170 57.6
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.2e-43 179.5 172 60.5
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 2.9e-43 179.1 173 57.8
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 5.0e-43 178.3 172 55.8
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 5.0e-43 178.3 168 58.9
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 8.5e-43 177.6 172 59.3
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 8.5e-43 177.6 172 59.3
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 1.1e-42 177.2 171 57.3
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 2.5e-42 176.0 169 57.4
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 4.2e-42 175.3 169 58.0
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 5.5e-42 174.9 168 56.0
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 9.4e-42 174.1 168 57.7
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 1.6e-41 173.3 167 55.7
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 2.7e-41 172.6 169 56.2
Phvul.003G115800 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 3.6e-41 172.2 173 57.2
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 6.1e-41 171.4 171 55.6
THA.LOC104818878 Tarenaya hassleriana HOM05D006035 ORTHO05D007155 1.4e-40 170.2 165 57.6
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 1.4e-40 170.2 174 56.9
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 3.0e-40 169.1 167 54.5
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 5.2e-40 168.3 172 57.0
Phvul.005G129600 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 6.7e-40 167.9 175 57.1
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 8.8e-40 167.5 170 57.1
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 1.2e-39 167.2 171 53.8
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 2.0e-39 166.4 171 55.0
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 3.3e-39 165.6 172 55.8
Eucgr.H04056 Eucalyptus grandis HOM05D006035 ORTHO05D007155 4.4e-39 165.2 198 49.5
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 4.4e-39 165.2 171 55.0
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 5.7e-39 164.9 171 55.0
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 5.7e-39 164.9 171 55.0
Glyma.07G238700 Glycine max HOM05D006035 ORTHO05D007155 5.7e-39 164.9 170 55.9
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 1.7e-38 163.3 168 55.4
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 2.2e-38 162.9 172 55.8
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 2.8e-38 162.5 170 56.5
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 4.8e-38 161.8 171 53.2
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 6.3e-38 161.4 170 51.2
Lalb_Chr13g0298531 Lupinus albus HOM05D006035 ORTHO05D007155 8.2e-38 161.0 171 52.6
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 8.2e-38 161.0 171 54.4
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 1.4e-37 160.2 167 51.5
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 1.8e-37 159.8 169 53.8
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 1.8e-37 159.8 169 55.0
Manes.03G205900 Manihot esculenta HOM05D006035 ORTHO05D007155 1.8e-37 159.8 150 58.0
Hma1.2p1_0013F.1_g008420 Hydrangea macrophylla HOM05D006035 ORTHO05D007155 4.1e-37 158.7 173 54.9
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 4.1e-37 158.7 174 54.0
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 5.3e-37 158.3 164 50.0
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 1.6e-36 156.8 170 52.4
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 2.0e-36 156.4 171 53.8
PSO761G0247 Papaver somniferum HOM05D006035 ORTHO05D007155 2.0e-36 156.4 168 51.8
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 3.5e-36 155.6 173 49.1
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 4.5e-36 155.2 172 50.6
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 5.9e-36 154.8 174 49.4
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 7.7e-36 154.5 180 50.0
Sopen01g024580 Solanum pennellii HOM05D006035 ORTHO05D007155 7.7e-36 154.5 168 50.0
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 1.0e-35 154.1 170 52.9
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 1.0e-35 154.1 170 52.9
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 1.0e-35 154.1 167 54.5
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 1.0e-35 154.1 150 52.0
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 1.0e-35 154.1 171 53.8
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 1.7e-35 153.3 170 54.1
PGSC0003DMG400001204 Solanum tuberosum HOM05D006035 ORTHO05D007155 1.7e-35 153.3 168 49.4
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 1.7e-35 153.3 168 56.5
Aa31LG11G8120 Aethionema arabicum HOM05D006035 ORTHO05D007155 2.2e-35 152.9 166 52.4
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 2.2e-35 152.9 168 54.2
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 3.8e-35 152.1 170 53.5
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 3.8e-35 152.1 168 52.4
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 3.8e-35 152.1 172 53.5
HanXRQChr11g0353881 Helianthus annuus HOM05D006035 ORTHO05D007155 5.0e-35 151.8 167 49.1
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 6.5e-35 151.4 171 49.1
PSO210G7669 Papaver somniferum HOM05D006035 ORTHO05D007155 6.5e-35 151.4 168 50.6
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 1.1e-34 150.6 165 53.3
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 1.9e-34 149.8 178 47.2
Lsat_1_v5_gn_1_41620 Lactuca sativa HOM05D006035 ORTHO05D007155 1.9e-34 149.8 167 51.5
Rhsim02G0003100 Rhododendron simsii HOM05D006035 ORTHO05D007155 1.9e-34 149.8 168 51.8
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 3.2e-34 149.1 170 52.4
ECA246G4755 Erigeron canadensis HOM05D006035 ORTHO05D007155 3.2e-34 149.1 167 51.5
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 3.2e-34 149.1 170 52.4
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 4.2e-34 148.7 165 53.9
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 4.2e-34 148.7 170 51.8
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 4.2e-34 148.7 172 48.3
Sp2g19800 Schrenkiella parvula HOM05D006035 ORTHO05D007155 4.2e-34 148.7 174 51.1
SpUn0021_0050 Schrenkiella parvula HOM05D006035 ORTHO05D007155 4.2e-34 148.7 174 51.1
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 5.5e-34 148.3 169 52.1
Lsat_1_v5_gn_6_116540 Lactuca sativa HOM05D006035 ORTHO05D007155 5.5e-34 148.3 167 51.5
Lsat_1_v5_gn_6_116560 Lactuca sativa HOM05D006035 ORTHO05D007155 9.4e-34 147.5 167 50.3
PGR031G3428 Punica granatum HOM05D006035 ORTHO05D007155 9.4e-34 147.5 170 50.0
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 2.7e-33 146.0 165 49.1
vmacro15178 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 4.7e-33 145.2 168 50.0
Actinidia31554 Actinidia chinensis HOM05D006035 ORTHO05D007155 8.0e-33 144.4 171 50.3
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 1.0e-32 144.1 171 46.2
Duzib052G0321 Durio zibethinus HOM05D006035 ORTHO05D007155 5.2e-32 141.7 170 50.6
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 5.2e-32 141.7 143 53.1
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 5.2e-32 141.7 148 50.7
HanXRQChr05g0146001 Helianthus annuus HOM05D006035 ORTHO05D007155 1.5e-31 140.2 167 47.3
TWI53G1140 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 3.4e-31 139.0 170 50.6
Sc19g0003080 Simmondsia chinensis HOM05D006035 ORTHO05D007155 1.7e-30 136.7 169 46.7
HPP92_008930 Vanilla planifolia HOM05D006035 ORTHO05D007155 4.1e-29 132.1 169 45.0
FAN07G1803 Fragaria x ananassa HOM05D006035 ORTHO05D007155 3.5e-28 129.0 170 48.2
MSTRG.10157 Avicennia marina HOM05D006035 ORTHO05D007155 4.7e-25 118.6 168 43.5
Manes.15G000900 Manihot esculenta HOM05D006035 ORTHO05D007155 2.3e-24 116.3 170 45.3
ATR0693G356 Amborella trichopoda HOM05D006035 ORTHO05D007155 1.5e-23 113.6 151 44.4
MD04G1036600 Malus domestica HOM05D006035 ORTHO05D007155 9.8e-23 110.9 108 58.3
CDE08G1648 Ceratophyllum demersum HOM05D006035 ORTHO05D007155 1.7e-22 110.2 130 51.5
Lj6P692T31 Lonicera japonica HOM05D006035 ORTHO05D007155 2.2e-22 109.8 108 56.5
Oeu038773.1 Olea europaea HOM05D006035 ORTHO05D007155 1.4e-21 107.1 203 37.9
HPP92_005426 Vanilla planifolia HOM05D006035 ORTHO05D007155 9.5e-18 94.4 158 36.1
Cpa.g.sc9.45 Carica papaya HOM05D006035 ORTHO05D007155 4.0e-16 89.0 170 40.6
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 5.2e-16 88.6 71 62.0
Zm00001eb395970 Zea mays HOM05D006035 ORTHO05D007155 2.6e-15 86.3 139 36.7
SEGI_01581 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 4.4e-15 85.5 150 32.7
SEGI_03909 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 4.4e-15 85.5 158 31.6
Oeu038774.1 Olea europaea HOM05D006035 ORTHO05D007155 6.4e-14 81.6 166 35.5
SEGI_08802 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 1.8e-13 80.1 149 32.9
Prupe.1G115600 Prunus persica HOM05D006035 ORTHO05D007155 9.2e-13 77.8 170 37.1
TAR362G0119 Trochodendron aralioides HOM05D006035 ORTHO05D007155 9.2e-13 77.8 168 35.7
CSS0018156 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.6e-12 77.0 169 36.7
Os03g0310800 Oryza sativa ssp. japonica HOM05D006035 ORTHO05D007155 2.7e-12 76.3 84 47.6
Ciclev10006337m.g Citrus clementina HOM05D006035 ORTHO05D007155 2.5e-10 69.7 56 66.1
QL06p006093 Quercus lobata HOM05D001729 ORTHO05D001155 2.5e-10 69.7 55 63.6
Pp3c16_2040 Physcomitrium patens HOM05D006035 ORTHO05D007155 4.3e-10 68.9 154 31.2
Pp3c25_1480 Physcomitrium patens HOM05D000227 ORTHO05D007155 2.3e-08 63.2 149 29.5
HPP92_020345 Vanilla planifolia HOM05D000227 ORTHO05D000451 2.3e-08 63.2 147 28.6
MBI19_g26577_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 4.0e-08 62.4 131 32.1
Carub.0008s0934 Capsella rubella HOM05D006035 ORTHO05D007155 5.2e-08 62.0 170 32.4
FAN10G0417 Fragaria x ananassa HOM05D000227 ORTHO05D000139 6.8e-08 61.6 134 29.1
CSS0018159 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.2e-07 60.8 147 32.0
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.5e-07 60.5 145 27.6
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.5e-07 60.5 145 27.6
Aqoxy2G03480 Aquilegia oxysepala HOM05D000227 ORTHO05D000451 2.0e-07 60.1 137 28.5
FAN06G4215 Fragaria x ananassa HOM05D000122 ORTHO05D017956 3.4e-07 59.3 134 28.4
CsaV3_2G004190 Cucumis sativus L. HOM05D000227 ORTHO05D000451 7.5e-07 58.2 149 27.5
Thhalv10026403m.g Eutrema salsugineum HOM05D000227 ORTHO05D004725 7.5e-07 58.2 155 29.0
CARHR215040 Cardamine hirsuta HOM05D000135 ORTHO05D000203 9.8e-07 57.8 137 29.9
MELO3C004375.2 Cucumis melo HOM05D000227 ORTHO05D000451 1.3e-06 57.4 150 28.0
unitig_46.g18471 Utricularia gibba HOM05D000059 ORTHO05D000528 1.3e-06 57.4 152 25.7
Cc04_g15840 Coffea canephora HOM05D000059 ORTHO05D000528 1.7e-06 57.0 152 27.0
Glyma.03G022800 Glycine max HOM05D000135 ORTHO05D000203 1.7e-06 57.0 135 34.1
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 2.2e-06 56.6 110 33.6
Sabra06G0037300 Salix brachista HOM05D000059 ORTHO05D000528 2.2e-06 56.6 154 26.0
Thecc.03G077400 Theobroma cacao HOM05D000059 ORTHO05D000528 2.2e-06 56.6 155 27.1
AT4G37010 Arabidopsis thaliana HOM05D000227 ORTHO05D004725 2.9e-06 56.2 155 29.0
FAN12G1754 Fragaria x ananassa HOM05D000135 ORTHO05D000203 2.9e-06 56.2 142 33.1
Gohir.A11G028991 Gossypium hirsutum HOM05D000059 ORTHO05D000528 2.9e-06 56.2 152 26.3
Potri.015G066200 Populus trichocarpa HOM05D000059 ORTHO05D000528 3.7e-06 55.8 155 26.5
AL7G13780 Arabidopsis lyrata HOM05D000227 ORTHO05D004725 4.9e-06 55.5 155 28.4
Mapoly0001s0559 Marchantia polymorpha HOM05D000135 ORTHO05D000203 4.9e-06 55.5 134 30.6
CANSAT54G1781 Cannabis sativa HOM05D000227 ORTHO05D000451 6.4e-06 55.1 128 31.2
Mapoly0033s0008 Marchantia polymorpha HOM05D006035 ORTHO05D007155 6.4e-06 55.1 187 29.4
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 6.4e-06 55.1 147 25.9
Sp7g34750 Schrenkiella parvula HOM05D000227 ORTHO05D004725 6.4e-06 55.1 157 29.9
SEGI_18095 Sequoiadendron giganteum HOM05D000135 ORTHO05D000203 6.4e-06 55.1 153 28.8
unitig_37.g12739 Utricularia gibba HOM05D000059 ORTHO05D000528 6.4e-06 55.1 153 26.1
Aa31LG4G4970 Aethionema arabicum HOM05D000059 ORTHO05D000528 8.3e-06 54.7 154 29.2
PGR102G1813 Punica granatum HOM05D000135 ORTHO05D000203 8.3e-06 54.7 133 29.3


User provided reference genes

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