Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 8.8e-227 790.0 421 100.0
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 3.9e-174 615.1 413 80.9
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.1e-147 527.3 414 71.0
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 1.4e-139 500.4 420 66.7
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 2.2e-52 210.7 451 41.5
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.3e-40 169.9 457 35.4
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.8e-39 167.2 448 34.6
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 1.1e-32 145.2 309 38.5
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 9.6e-32 142.1 426 35.0
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 1.1e-30 138.7 418 34.9
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 6.9e-30 136.0 415 34.9
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 3.2e-27 127.1 287 36.6
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.6e-26 124.8 237 40.1
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.0e-25 122.1 249 38.2
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.0e-25 122.1 287 35.9
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 1.3e-23 115.2 451 29.9
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 4.8e-23 113.2 287 36.6
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 1.4e-22 111.7 367 31.9
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 1.8e-22 111.3 167 44.3
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 9.0e-22 109.0 181 42.5
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 5.8e-21 106.3 278 35.3
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 7.6e-21 105.9 319 32.0
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 9.9e-21 105.5 476 26.7
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.1e-19 102.1 436 28.9
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.4e-19 101.7 176 38.6
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.9e-19 101.3 472 29.4
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.2e-18 98.6 320 30.0
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 3.5e-18 97.1 460 27.8
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 6.0e-18 96.3 185 37.8
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 9.6e-16 89.0 346 27.5
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 2.1e-15 87.8 444 27.5
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 4.8e-15 86.7 328 30.8
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 6.2e-15 86.3 229 34.1
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 8.2e-15 85.9 258 31.0
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 1.8e-14 84.7 76 51.3
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 2.2e-12 77.8 429 27.0
Thhalv10016741m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 8.4e-12 75.9 376 27.1
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 8.4e-12 75.9 246 30.5
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 1.9e-11 74.7 131 38.9
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 1.9e-11 74.7 94 39.4
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 3.2e-11 73.9 176 31.2
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 5.5e-11 73.2 237 28.3
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 1.2e-10 72.0 476 25.0
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.1e-10 71.2 222 31.1
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 2.1e-10 71.2 176 30.7
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 1.8e-09 68.2 477 26.0
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 2.3e-09 67.8 207 30.9
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 3.9e-09 67.0 439 25.3
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 5.1e-09 66.6 287 26.5
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.1e-08 65.5 207 30.4
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 1.9e-08 64.7 207 30.9
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 4.3e-08 63.5 207 30.9
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 5.7e-08 63.2 423 27.7
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.7e-08 63.2 159 32.7
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 5.7e-08 63.2 68 41.2
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 7.4e-08 62.8 306 26.5
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 1.6e-07 61.6 207 29.0
AL4G41050 Arabidopsis lyrata HOM05D004311 ORTHO05D005145 2.2e-07 61.2 307 26.1
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 2.2e-07 61.2 177 29.4
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 2.8e-07 60.8 251 25.5
CARHR137580 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.8e-07 60.8 219 27.9
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 3.7e-07 60.5 326 26.7
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 8.2e-07 59.3 166 30.7
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 6.9e-06 56.2 54 46.3
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 6.9e-06 56.2 424 25.0
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 9.0e-06 55.8 83 42.2


User provided reference genes

Program Settings