Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 0.0e+00 1404.4 717 100.0
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.6e-265 919.5 721 70.9
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 1.8e-232 809.7 724 63.1
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 9.1e-208 727.6 726 59.6
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 1.4e-123 448.0 762 41.6
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.8e-115 421.0 731 40.4
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 6.5e-113 412.5 760 39.9
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 2.8e-100 370.5 762 38.5
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 6.7e-94 349.4 781 37.8
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 4.5e-90 336.7 425 50.4
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 2.5e-88 330.9 784 36.2
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 5.5e-88 329.7 766 36.2
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 1.8e-86 324.7 763 36.3
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 6.3e-84 316.2 768 36.1
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 1.1e-83 315.5 791 35.5
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 7.0e-83 312.8 783 35.4
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 1.0e-81 308.9 774 35.7
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 4.7e-79 300.1 779 35.0
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 6.1e-79 299.7 767 35.1
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 1.0e-78 298.9 763 35.3
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 1.4e-78 298.5 771 35.7
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 1.4e-78 298.5 773 34.9
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.2e-77 295.4 781 35.7
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 1.5e-77 295.0 771 34.6
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 5.7e-77 293.1 757 37.4
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 7.5e-77 292.7 783 34.2
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.3e-76 292.0 814 34.2
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 1.3e-76 292.0 788 35.5
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 5.4e-75 286.6 775 34.1
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.2e-74 285.4 779 34.7
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.6e-74 285.0 788 32.6
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.6e-74 285.0 776 34.7
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.5e-74 283.9 764 34.9
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 3.5e-74 283.9 761 33.9
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 5.9e-74 283.1 781 33.7
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 7.7e-74 282.7 764 35.2
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 7.7e-74 282.7 764 35.2
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.3e-73 282.0 762 34.8
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 2.3e-73 281.2 776 34.3
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 3.8e-73 280.4 771 34.4
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.9e-72 278.1 770 34.4
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.9e-72 278.1 787 33.7
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 2.5e-72 277.7 766 35.2
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 1.2e-71 275.4 761 34.0
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 4.7e-71 273.5 788 33.0
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 8.0e-71 272.7 771 34.4
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 5.2e-70 270.0 786 34.7
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 8.9e-70 269.2 773 35.2
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 1.5e-69 268.5 774 34.9
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 2.0e-69 268.1 765 34.5
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 2.0e-69 268.1 767 34.0
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 2.6e-69 267.7 777 33.2
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 2.6e-69 267.7 752 33.9
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 3.4e-69 267.3 774 33.2
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 3.4e-69 267.3 786 33.5
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 5.7e-69 266.5 774 33.5
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 9.8e-69 265.8 768 34.0
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 8.3e-68 262.7 764 34.2
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 1.1e-67 262.3 764 34.3
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 1.1e-67 262.3 767 32.3
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 3.2e-67 260.8 757 34.5
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 4.1e-67 260.4 759 33.7
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 7.0e-67 259.6 758 33.0
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 1.6e-66 258.5 753 34.4
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 2.0e-66 258.1 771 32.8
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 2.0e-66 258.1 811 32.8
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 7.8e-66 256.1 772 33.5
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 1.0e-65 255.8 788 33.1
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 8.6e-65 252.7 753 32.8
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 1.9e-64 251.5 771 32.7
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 3.6e-63 247.3 758 32.5
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 4.7e-63 246.9 772 32.4
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 4.0e-62 243.8 766 32.1
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 2.2e-60 238.0 780 32.1
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 2.9e-60 237.7 768 32.3
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 4.1e-59 233.8 619 34.1
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 7.0e-59 233.0 757 31.0
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 7.0e-59 233.0 443 40.2
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 7.0e-59 233.0 745 32.1
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 1.6e-58 231.9 664 33.7
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 7.8e-58 229.6 751 33.0
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 2.3e-57 228.0 752 32.3
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 3.0e-57 227.6 444 42.8
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 3.3e-56 224.2 447 41.2
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 1.4e-54 218.8 776 31.8
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 1.2e-53 215.7 768 31.9
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 9.8e-53 212.6 768 31.8
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.9e-52 211.1 433 38.8
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 1.4e-51 208.8 761 31.9
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 1.2e-50 205.7 745 32.3
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 1.2e-50 205.7 468 38.0
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 7.8e-50 203.0 732 32.2
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 1.7e-49 201.8 737 30.8
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.9e-49 200.7 771 31.0
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.1e-48 199.1 594 31.8
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 5.6e-48 196.8 736 30.8
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 9.5e-48 196.1 757 31.0
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 4.7e-47 193.7 749 30.4
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 6.2e-47 193.4 769 30.7
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 8.1e-47 193.0 738 30.2
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 6.8e-46 189.9 757 29.5
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 8.9e-46 189.5 711 29.8
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 4.4e-45 187.2 755 29.3
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 5.8e-45 186.8 757 29.7
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 7.6e-45 186.4 756 29.0
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 2.2e-44 184.9 740 29.6
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 3.7e-44 184.1 755 29.0
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.9e-44 183.7 633 30.3
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 3.2e-43 181.0 477 35.0
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 5.4e-43 180.3 735 28.7
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 7.1e-43 179.9 737 29.4
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 1.9e-40 171.8 756 29.8
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 3.3e-40 171.0 759 30.0
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 5.6e-40 170.2 736 29.8
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 2.8e-39 167.9 432 35.0
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 3.6e-39 167.5 753 28.6
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 4.7e-39 167.2 762 29.3
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 1.4e-38 165.6 446 35.0
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 4.4e-37 160.6 604 29.3
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 1.1e-35 156.0 745 27.9
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 4.0e-30 137.5 188 49.5
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 2.0e-29 135.2 143 55.2
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 1.3e-28 132.5 456 30.7
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 8.4e-28 129.8 754 26.9
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 1.0e-25 122.9 126 57.9
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 5.1e-25 120.6 182 42.3
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 1.1e-24 119.4 226 40.3
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 1.5e-24 119.0 416 31.0
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 1.7e-20 105.5 413 28.3
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 6.4e-20 103.6 778 28.1
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 5.6e-16 90.5 95 52.6
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 1.1e-14 86.3 105 48.6
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 3.1e-14 84.7 97 48.5
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 5.5e-11 73.9 786 24.7
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 2.3e-09 68.6 159 35.2
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 4.8e-07 60.8 186 31.7
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 4.8e-07 60.8 250 32.0
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.9e-06 57.0 86 43.0


User provided reference genes

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