Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 5.3e-287 990.3 502 100.0
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.2e-267 926.0 503 93.8
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.5e-254 880.9 500 89.2
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.2e-201 706.8 397 89.7
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 8.9e-194 680.6 501 69.9
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.7e-189 666.4 482 70.5
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 7.3e-188 661.0 507 69.0
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.1e-187 659.4 504 68.8
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 6.2e-187 657.9 472 72.2
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 3.1e-186 655.6 471 71.8
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.4e-185 652.1 499 68.1
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 9.9e-185 650.6 521 66.6
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.3e-184 650.2 494 67.4
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.7e-184 649.8 499 68.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 5.4e-183 644.8 495 68.1
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.2e-182 643.7 513 66.9
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-182 643.3 470 70.2
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-182 643.3 470 70.2
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.1e-182 642.9 505 67.3
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 2.1e-182 642.9 495 68.3
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 3.0e-181 639.0 489 67.9
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 5.1e-181 638.3 508 66.5
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 4.3e-180 635.2 474 68.6
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 5.6e-180 634.8 506 67.2
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 9.6e-180 634.0 503 67.0
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-179 633.6 502 67.5
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.1e-178 630.6 498 65.9
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.4e-178 630.2 488 67.8
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 2.4e-178 629.4 506 64.0
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 4.0e-178 628.6 484 67.8
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 4.0e-178 628.6 471 68.2
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 9.0e-178 627.5 501 64.5
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.2e-177 627.1 444 70.5
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-177 627.1 444 70.5
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.2e-177 627.1 473 68.5
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.5e-177 626.7 468 69.9
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 2.0e-177 626.3 501 63.3
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.0e-177 626.3 444 70.3
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.6e-177 625.9 490 67.6
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 3.4e-177 625.5 499 64.1
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 3.4e-177 625.5 471 68.8
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 4.5e-177 625.2 484 67.4
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.7e-176 623.2 506 65.4
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.9e-176 622.5 497 63.0
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 3.8e-176 622.1 511 63.8
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 4.9e-176 621.7 498 65.3
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 6.4e-176 621.3 473 68.3
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 6.4e-176 621.3 474 68.4
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.1e-175 620.5 489 64.6
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 1.4e-175 620.2 508 64.6
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.4e-175 620.2 444 69.6
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.4e-175 619.4 480 66.5
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.2e-175 619.0 444 68.9
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 4.2e-175 618.6 471 68.2
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 2.7e-174 615.9 466 67.2
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 2.7e-174 615.9 477 67.5
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 3.5e-174 615.5 508 62.4
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 3.5e-174 615.5 508 62.4
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.5e-174 615.5 504 62.5
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 7.9e-174 614.4 509 63.3
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 7.9e-174 614.4 509 63.3
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 7.9e-174 614.4 508 64.2
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 5.1e-173 611.7 512 62.9
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 8.7e-173 610.9 470 65.1
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 7.4e-172 607.8 469 67.4
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 9.6e-172 607.4 504 64.3
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 9.6e-172 607.4 501 61.5
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 9.6e-172 607.4 492 61.8
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.3e-171 607.1 508 63.8
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.6e-171 606.7 468 64.7
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 2.8e-171 605.9 492 62.0
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 8.1e-171 604.4 491 65.2
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.4e-170 603.6 522 63.0
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.8e-170 603.2 474 64.1
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 3.1e-170 602.4 495 63.4
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.0e-169 599.7 510 62.0
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 5.8e-169 598.2 483 63.4
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.1e-167 594.0 505 61.6
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.9e-167 593.2 502 63.5
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.2e-167 592.4 510 62.0
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 4.2e-167 592.0 490 60.8
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.1e-164 583.9 525 60.6
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.6e-163 580.1 531 57.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 8.2e-163 577.8 447 65.5
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 5.3e-162 575.1 501 60.7
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.6e-161 572.8 426 67.8
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.5e-160 568.2 443 66.4
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 9.3e-159 564.3 538 58.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 1.0e-157 560.8 490 62.7
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 4.2e-151 538.9 427 63.0
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.7e-150 536.2 427 63.0
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.5e-148 530.4 507 55.8
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 7.4e-148 528.1 508 57.7
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.3e-147 527.3 564 53.7
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.4e-145 519.2 498 56.8
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 9.4e-143 511.1 509 56.0
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.4e-141 507.3 394 67.5
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 8.2e-139 498.0 477 56.0
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.2e-135 486.1 415 60.5
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 3.6e-134 482.6 491 56.6
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.1e-130 469.2 443 58.2
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 9.1e-122 441.4 441 53.5
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 4.2e-119 432.6 441 51.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 3.0e-117 426.4 363 64.7
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 2.0e-108 397.1 268 73.9
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.3e-101 373.6 229 79.9
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.4e-90 337.8 269 66.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.5e-89 333.2 240 65.8
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.5e-89 333.2 240 65.8
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 6.0e-89 332.4 201 80.1
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 1.3e-88 331.3 202 79.2
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.6e-81 307.8 295 57.6
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 8.6e-80 302.0 322 50.3
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 2.2e-75 287.3 299 49.2
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 6.4e-75 285.8 239 63.2
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 8.7e-72 275.4 188 72.9
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.4e-69 268.1 328 46.3
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 2.9e-67 260.4 182 68.7
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.3e-66 255.4 214 63.6
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.0e-64 251.9 178 70.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 7.3e-63 245.7 249 51.8
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 7.3e-63 245.7 235 57.0
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 9.6e-63 245.4 214 62.1
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.0e-61 238.8 224 56.7
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 2.4e-53 214.2 158 67.1
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 4.9e-51 206.5 171 62.0
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 6.0e-49 199.5 164 59.8
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 7.9e-41 172.6 522 25.9
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 2.9e-35 154.1 485 30.3
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.5e-34 149.8 139 59.0
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.7e-30 138.3 234 40.6
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.7e-27 128.3 152 48.0
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-25 122.1 116 57.8
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 2.1e-25 121.3 141 46.8
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 4.5e-20 103.6 55 89.1
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-16 92.4 100 50.0
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.1e-13 80.5 62 62.9
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 3.5e-12 77.4 153 35.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.5e-10 72.0 54 61.1
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.5e-10 71.2 62 58.1
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.5e-10 71.2 62 69.4
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 9.4e-10 69.3 149 32.9
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.8e-08 62.8 89 46.1
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 4.4e-07 60.5 76 44.7


User provided reference genes

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