Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.3e-136 490.0 294 100.0
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 7.5e-108 394.4 336 72.0
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.2e-98 362.5 336 69.6
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.7e-96 356.7 348 64.9
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.1e-87 327.4 347 62.8
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 5.4e-82 308.5 343 61.2
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.2e-70 268.5 328 49.4
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 5.4e-66 255.4 322 49.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 7.8e-65 251.5 341 57.5
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.3e-64 250.8 335 51.0
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 8.7e-64 248.1 337 52.8
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.9e-63 246.9 335 50.4
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.9e-63 246.9 347 49.3
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 3.3e-63 246.1 335 53.7
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.3e-63 246.1 335 53.7
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.3e-63 246.1 335 53.7
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 4.3e-63 245.7 329 56.5
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 7.3e-63 245.0 333 50.5
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.8e-62 242.3 335 52.8
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 3.1e-61 239.6 329 53.8
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.3e-59 234.2 333 53.2
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.7e-59 233.8 335 53.7
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 2.9e-59 233.0 335 46.9
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 3.8e-59 232.6 337 52.2
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 4.9e-59 232.3 328 51.2
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 8.4e-59 231.5 337 51.9
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.4e-58 228.8 316 51.3
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.1e-58 228.4 333 52.0
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 2.1e-57 226.9 338 52.1
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.8e-56 223.8 332 51.5
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 2.3e-56 223.4 332 48.5
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.7e-56 221.9 337 50.7
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.1e-55 221.1 327 48.0
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.5e-55 220.7 332 50.6
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.9e-55 220.3 328 47.9
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.3e-54 217.6 334 48.8
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 2.1e-54 216.9 333 48.6
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 2.4e-53 213.4 301 51.2
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 4.0e-53 212.6 331 46.5
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 4.0e-53 212.6 331 46.5
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 5.3e-53 212.2 328 48.8
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 6.9e-53 211.8 339 49.0
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.6e-52 209.9 332 49.1
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 3.4e-52 209.5 330 46.4
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.7e-51 207.2 337 50.1
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.7e-51 207.2 332 47.3
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 2.9e-51 206.5 332 47.3
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.4e-51 205.3 332 47.0
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.1e-50 204.5 333 46.8
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.9e-50 203.8 329 49.2
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.9e-50 203.8 327 47.4
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.7e-49 199.9 338 47.0
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.5e-49 199.5 338 44.1
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.5e-49 199.5 338 44.1
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 6.0e-49 198.7 327 47.7
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.8e-48 197.2 338 48.8
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 3.9e-48 196.1 329 42.9
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 6.7e-48 195.3 342 47.1
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 8.7e-48 194.9 327 47.4
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.1e-47 194.5 334 42.5
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 4.3e-47 192.6 327 47.4
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 9.6e-47 191.4 334 47.9
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 8.1e-46 188.3 340 46.8
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 8.1e-46 188.3 332 43.1
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.1e-45 188.0 326 43.9
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.4e-45 187.6 338 41.1
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.4e-45 187.6 328 46.3
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 2.4e-45 186.8 332 45.8
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 5.8e-44 182.2 329 47.1
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 5.8e-44 182.2 350 42.6
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.7e-43 180.6 338 41.7
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 2.2e-43 180.3 349 42.1
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.2e-43 180.3 327 43.1
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 4.2e-42 176.0 326 43.6
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 9.3e-42 174.9 326 47.9
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 9.3e-42 174.9 349 42.7
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 9.3e-42 174.9 308 48.1
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.2e-41 174.5 350 41.7
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.6e-41 174.1 328 49.1
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.7e-41 173.3 336 49.4
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 6.0e-41 172.2 344 41.9
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 5.1e-40 169.1 349 41.3
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.9e-39 167.2 350 43.1
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 1.6e-38 164.1 330 45.8
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 2.1e-38 163.7 343 39.4
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 4.8e-38 162.5 342 38.6
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.7e-35 154.1 323 43.3
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.0e-35 152.5 339 40.4
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 1.4e-34 151.0 333 37.8
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 1.4e-34 151.0 333 37.8
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 1.9e-34 150.6 328 43.3
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.1e-33 147.1 312 38.8
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.6e-33 146.4 314 42.0
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.0e-32 144.8 333 42.0
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 2.3e-32 143.7 334 39.5
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.0e-32 143.3 305 37.4
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 3.9e-32 142.9 322 38.2
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.7e-32 142.1 332 39.2
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 8.7e-32 141.7 301 37.9
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 1.1e-31 141.4 305 36.4
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.3e-31 139.8 334 35.9
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.3e-31 139.8 335 40.0
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 5.7e-31 139.0 194 47.9
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.7e-31 139.0 335 40.0
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 2.2e-30 137.1 310 39.0
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 4.8e-30 136.0 305 36.4
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 4.8e-30 136.0 332 38.3
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 8.2e-30 135.2 334 35.6
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 8.2e-30 135.2 334 38.6
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.8e-29 134.0 307 41.7
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.4e-29 133.7 314 38.2
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.1e-29 133.3 288 41.0
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 5.3e-29 132.5 300 42.3
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 9.1e-29 131.7 319 39.5
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 9.1e-29 131.7 332 36.7
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.5e-28 131.0 300 42.0
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.9e-28 129.0 335 37.9
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.9e-28 129.0 335 37.9
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.2e-27 127.1 323 36.5
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.9e-27 126.7 168 57.7
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 6.5e-27 125.6 302 38.1
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 1.1e-26 124.8 229 47.6
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.9e-26 124.0 207 43.5
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 3.2e-26 123.2 296 34.8
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 7.2e-26 122.1 288 34.7
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.6e-25 120.9 318 36.8
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 1.6e-25 120.9 301 37.2
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.6e-25 120.9 288 34.4
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.0e-24 116.7 320 39.1
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 3.0e-24 116.7 280 43.2
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 3.9e-24 116.3 322 31.4
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 6.7e-24 115.5 299 35.1
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.1e-23 114.8 299 37.8
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 5.7e-23 112.5 296 37.5
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 9.7e-23 111.7 294 38.8
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.8e-22 110.2 239 44.8
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.8e-22 109.4 313 38.7
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 6.3e-22 109.0 282 35.8
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 6.3e-22 109.0 316 37.0
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.2e-20 104.8 333 35.7
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.0e-20 104.0 172 49.4
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 5.9e-20 102.4 281 37.0
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 5.9e-20 102.4 281 37.0
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 5.0e-19 99.4 220 43.6
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 2.1e-17 94.0 311 30.2
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 7.9e-17 92.0 289 33.9
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 9.7e-15 85.1 299 29.4
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 3.7e-14 83.2 284 36.3
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 6.3e-14 82.4 299 29.8
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.4e-13 81.3 283 37.5
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 5.0e-11 72.8 250 30.0
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 8.5e-11 72.0 292 33.6
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.5e-10 71.2 281 32.4
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 1.9e-10 70.9 264 33.3
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 1.9e-10 70.9 264 33.3
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 7.2e-10 68.9 144 43.8
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 9.4e-10 68.6 270 32.2
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.6e-09 67.8 283 30.4
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 2.1e-09 67.4 271 32.5
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 4.7e-09 66.2 288 34.0
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 1.8e-08 64.3 288 34.0


User provided reference genes

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