Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 3.8e-153 545.0 322 100.0
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 9.4e-96 354.4 249 85.9
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 4.7e-55 219.2 252 65.5
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 7.8e-50 201.8 247 60.7
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 5.6e-48 195.7 247 57.1
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 2.8e-47 193.4 237 57.4
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 2.3e-46 190.3 241 55.2
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 2.3e-46 190.3 236 60.2
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 5.2e-46 189.1 190 66.8
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 8.9e-46 188.3 236 58.9
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 2.0e-45 187.2 236 59.7
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 9.9e-45 184.9 238 58.0
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 1.2e-42 177.9 118 77.1
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 2.1e-42 177.2 254 60.2
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 2.1e-42 177.2 118 75.4
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 2.7e-42 176.8 112 79.5
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 3.5e-42 176.4 244 58.2
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 7.8e-42 175.3 114 78.9
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 7.8e-42 175.3 254 52.8
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 7.8e-42 175.3 118 74.6
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 1.0e-41 174.9 109 78.0
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 1.0e-41 174.9 110 80.0
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 1.7e-41 174.1 249 50.6
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 1.7e-41 174.1 110 80.9
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 3.0e-41 173.3 118 74.6
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 3.9e-41 172.9 222 62.6
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 8.6e-41 171.8 114 78.1
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 8.6e-41 171.8 116 70.7
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 1.1e-40 171.4 117 78.6
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 1.9e-40 170.6 114 77.2
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 2.5e-40 170.2 222 63.1
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 2.5e-40 170.2 242 61.2
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 2.5e-40 170.2 109 80.7
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 2.5e-40 170.2 198 64.6
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 7.3e-40 168.7 239 61.5
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 7.3e-40 168.7 253 54.9
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 9.6e-40 168.3 103 80.6
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 1.2e-39 167.9 108 78.7
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 1.2e-39 167.9 245 60.8
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 1.2e-39 167.9 106 79.2
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 1.2e-39 167.9 108 78.7
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 1.6e-39 167.5 253 56.9
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.6e-39 167.5 114 75.4
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 2.1e-39 167.2 246 60.2
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 2.1e-39 167.2 201 68.7
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 2.8e-39 166.8 108 76.9
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 3.6e-39 166.4 256 51.2
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 3.6e-39 166.4 115 73.0
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 4.7e-39 166.0 239 61.5
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 4.7e-39 166.0 114 72.8
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 4.7e-39 166.0 105 79.0
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 8.1e-39 165.2 250 56.8
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 8.1e-39 165.2 108 79.6
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 8.1e-39 165.2 108 79.6
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 1.1e-38 164.9 107 78.5
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 1.1e-38 164.9 105 82.9
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.4e-38 164.5 115 71.3
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.8e-38 164.1 243 53.1
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 1.8e-38 164.1 219 63.0
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 1.8e-38 164.1 115 73.9
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 3.1e-38 163.3 115 69.6
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 3.1e-38 163.3 122 68.9
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 3.1e-38 163.3 105 76.2
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.1e-38 163.3 108 74.1
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 4.0e-38 162.9 115 73.0
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 4.0e-38 162.9 244 53.3
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 8.9e-38 161.8 243 54.7
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 8.9e-38 161.8 250 53.6
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 1.2e-37 161.4 107 75.7
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 1.5e-37 161.0 115 70.4
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 2.0e-37 160.6 243 53.1
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 3.4e-37 159.8 105 81.9
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 4.4e-37 159.5 115 68.7
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 5.8e-37 159.1 108 73.1
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 7.6e-37 158.7 244 54.5
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 9.9e-37 158.3 113 70.8
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 9.9e-37 158.3 243 59.3
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.3e-36 157.9 237 56.5
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.3e-36 157.9 118 68.6
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 2.9e-36 156.8 242 54.1
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 2.9e-36 156.8 246 52.0
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 4.9e-36 156.0 101 77.2
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 6.4e-36 155.6 109 71.6
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 8.4e-36 155.2 243 56.4
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.1e-35 154.8 111 69.4
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 1.4e-35 154.5 108 72.2
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.4e-35 154.5 237 54.0
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 1.9e-35 154.1 105 74.3
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.9e-35 154.1 105 74.3
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.9e-35 154.1 120 68.3
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 3.2e-35 153.3 110 70.9
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 3.2e-35 153.3 110 70.9
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 4.2e-35 152.9 111 67.6
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 9.3e-35 151.8 244 45.9
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 9.3e-35 151.8 244 48.4
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 9.3e-35 151.8 129 63.6
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 1.2e-34 151.4 244 55.3
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 1.2e-34 151.4 244 55.3
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 1.2e-34 151.4 110 68.2
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 2.1e-34 150.6 107 69.2
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 2.1e-34 150.6 162 55.6
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 2.7e-34 150.2 110 65.5
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.7e-34 150.2 114 68.4
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 3.5e-34 149.8 107 70.1
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 4.6e-34 149.4 111 66.7
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 6.0e-34 149.1 107 70.1
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 8.7e-33 145.2 117 61.5
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 1.1e-32 144.8 118 64.4
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.5e-32 144.4 109 67.9
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 1.9e-32 144.1 252 53.6
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.3e-32 143.3 107 66.4
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 9.6e-32 141.7 112 66.1
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 2.4e-30 137.1 106 67.9
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 5.3e-30 136.0 107 61.7
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 5.3e-30 136.0 107 63.6
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 1.2e-29 134.8 100 67.0
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 1.5e-29 134.4 109 61.5
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 2.0e-29 134.0 107 61.7
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 2.0e-29 134.0 107 61.7
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 2.0e-29 134.0 107 61.7
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 2.0e-29 134.0 107 61.7
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 2.0e-29 134.0 107 62.6
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 2.6e-29 133.7 107 61.7
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 4.5e-29 132.9 107 61.7
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 5.8e-29 132.5 243 45.3
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 7.6e-29 132.1 100 70.0
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 9.9e-29 131.7 104 64.4
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.7e-28 131.0 165 49.1
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.7e-28 131.0 103 62.1
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.4e-27 127.1 98 64.3
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 2.4e-27 127.1 258 47.7
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 9.3e-27 125.2 107 59.8
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 9.3e-27 125.2 95 66.3
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 2.3e-25 120.6 107 60.7
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 2.8e-23 113.6 101 61.4
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 4.0e-22 109.8 85 62.4
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 7.1e-19 99.0 105 48.6
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 8.7e-17 92.0 205 37.1
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 6.2e-15 85.9 64 75.0
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 7.9e-10 68.9 62 62.9
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 3.0e-09 67.0 67 56.7
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 6.7e-09 65.9 103 45.6
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 6.7e-09 65.9 103 45.6
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 8.7e-09 65.5 103 45.6
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 8.7e-09 65.5 67 55.2
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 1.9e-08 64.3 102 45.1
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 1.9e-08 64.3 102 45.1
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 5.7e-08 62.8 103 42.7
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 1.4e-06 58.2 102 37.3
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 1.4e-06 58.2 101 40.6
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 1.4e-06 58.2 101 40.6
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 1.8e-06 57.8 102 37.3
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 3.1e-06 57.0 102 38.2
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 3.1e-06 57.0 102 38.2
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 4.1e-06 56.6 102 40.2
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 4.1e-06 56.6 96 38.5
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 5.3e-06 56.2 102 40.2
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 5.3e-06 56.2 102 40.2
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 5.3e-06 56.2 100 35.0
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 5.3e-06 56.2 100 35.0
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 5.3e-06 56.2 101 36.6
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 6.9e-06 55.8 102 36.3
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 9.0e-06 55.5 104 36.5
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 9.0e-06 55.5 102 39.2


User provided reference genes

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