Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 4.9e-274 947.2 481 100.0
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 2.5e-233 812.0 481 86.9
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 1.3e-213 746.5 481 79.2
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 1.9e-169 599.7 487 65.7
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 2.2e-165 586.3 481 68.2
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 1.3e-162 577.0 537 60.0
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 1.9e-161 573.2 481 64.4
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 8.4e-157 557.8 482 62.4
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 2.7e-155 552.7 479 63.7
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 6.0e-155 551.6 482 62.4
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 3.0e-154 549.3 483 63.1
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 3.9e-154 548.9 483 62.1
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 4.3e-153 545.4 481 63.4
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 6.2e-152 541.6 423 68.3
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 6.9e-151 538.1 453 63.4
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 2.0e-150 536.6 482 61.0
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 4.4e-150 535.4 483 61.7
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 7.6e-150 534.6 450 63.8
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 1.7e-149 533.5 484 59.7
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 1.7e-149 533.5 423 66.7
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 2.2e-149 533.1 491 62.1
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 4.9e-149 531.9 444 63.5
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 6.4e-149 531.6 491 59.7
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 7.8e-147 524.6 482 60.6
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 7.8e-147 524.6 487 60.0
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 2.3e-146 523.1 489 59.3
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 1.1e-145 520.8 488 59.2
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 6.2e-144 515.0 488 58.8
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 2.4e-143 513.1 395 67.8
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 1.2e-142 510.8 485 59.8
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 2.0e-142 510.0 485 59.8
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 1.3e-141 507.3 485 58.8
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 3.8e-141 505.8 423 63.1
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 8.4e-141 504.6 452 61.3
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 5.4e-140 501.9 485 58.8
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 1.2e-139 500.7 482 58.1
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 1.2e-139 500.7 487 56.5
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 2.1e-139 500.0 408 65.0
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 2.7e-139 499.6 487 56.1
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 3.5e-139 499.2 435 61.4
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 6.0e-139 498.4 486 55.6
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 6.0e-139 498.4 423 61.2
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 2.3e-138 496.5 501 57.3
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 3.0e-138 496.1 488 58.0
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 3.0e-138 496.1 488 58.0
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 5.1e-138 495.4 488 58.0
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 6.7e-138 495.0 486 56.8
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 5.6e-137 491.9 489 56.6
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 9.6e-137 491.1 422 63.5
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 9.6e-137 491.1 482 57.7
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-136 490.7 407 65.4
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 2.8e-136 489.6 496 57.1
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 3.7e-136 489.2 490 55.9
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 4.8e-136 488.8 490 55.7
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 1.4e-135 487.3 488 56.8
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 4.0e-135 485.7 516 55.2
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 5.3e-135 485.3 412 62.6
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 6.9e-135 485.0 415 60.7
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 9.0e-135 484.6 493 56.6
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 9.0e-135 484.6 415 61.0
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 1.2e-134 484.2 493 56.8
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 7.6e-134 481.5 492 55.9
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 1.7e-133 480.3 508 54.9
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 2.2e-133 479.9 484 56.4
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 2.9e-133 479.6 488 55.7
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 2.9e-133 479.6 510 54.7
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 4.9e-133 478.8 422 60.4
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 8.4e-133 478.0 417 62.1
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 2.7e-131 473.0 387 64.9
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 1.0e-130 471.1 482 56.0
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 1.1e-129 467.6 481 55.3
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 2.4e-127 459.9 490 54.3
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 1.8e-122 443.7 423 59.1
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 9.7e-121 438.0 340 67.9
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 3.7e-120 436.0 299 73.6
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 8.2e-120 434.9 486 51.4
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 1.4e-119 434.1 407 57.0
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 2.9e-117 426.4 425 53.2
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 1.2e-115 421.0 462 50.6
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 1.6e-115 420.6 382 61.5
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 7.9e-115 418.3 410 55.6
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 6.7e-114 415.2 323 66.6
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 8.8e-114 414.8 582 46.4
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 2.0e-113 413.7 451 51.4
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 3.3e-113 412.9 401 56.9
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 8.2e-112 408.3 345 64.3
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 1.8e-111 407.1 352 62.5
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 3.1e-111 406.4 482 50.4
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 1.0e-109 401.4 454 52.0
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 3.6e-107 392.9 434 54.4
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 3.6e-107 392.9 462 48.5
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 5.7e-105 385.6 382 58.6
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 3.6e-99 366.3 263 69.6
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 5.2e-98 362.5 478 47.3
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 8.8e-98 361.7 298 66.1
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 8.8e-98 361.7 298 66.1
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 1.7e-96 357.5 344 60.2
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 5.9e-94 349.0 327 58.1
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 6.5e-85 318.9 348 52.3
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 4.7e-83 312.8 234 69.2
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 4.0e-82 309.7 356 51.7
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 2.0e-81 307.4 233 67.8
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 4.4e-81 306.2 365 46.0
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 3.1e-79 300.1 231 68.4
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 3.5e-78 296.6 461 38.4
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 3.5e-78 296.6 448 40.4
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 5.9e-78 295.8 247 62.3
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 1.0e-74 285.0 394 41.4
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 1.7e-72 277.7 385 47.0
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 7.0e-71 272.3 311 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 4.6e-70 269.6 381 39.4
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 1.0e-69 268.5 276 56.5
Ciclev10033590m.g Citrus clementina HOM05D005782 ORTHO05D007436 1.3e-69 268.1 245 60.8
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 1.7e-69 267.7 386 46.4
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 1.5e-65 254.6 212 64.2
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 6.0e-62 242.7 297 45.5
Peaxi162Scf00474g00214 Petunia axillaris HOM05D005782 ORTHO05D007436 1.1e-58 231.9 252 54.8
Peaxi162Scf00474g00221 Petunia axillaris HOM05D005782 ORTHO05D007436 1.6e-54 218.0 195 59.5
Solyc07g042800.2 Solanum lycopersicum HOM05D005782 ORTHO05D007436 3.5e-54 216.9 250 52.0
Solyc07g042820.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 9.2e-47 192.2 201 52.7
Actinidia02524 Actinidia chinensis HOM05D005782 ORTHO05D007436 5.6e-44 183.0 194 52.6
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 1.9e-39 167.9 125 63.2
QL11p007002 Quercus lobata HOM05D005782 ORTHO05D007436 3.5e-38 163.7 136 62.5
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 2.3e-37 161.0 304 42.8
Cfa012883 Carpinus fangiana HOM05D005782 ORTHO05D000300 3.4e-25 120.6 110 58.2
Cre06.g260250 Chlamydomonas reinhardtii HOM05D005782 ORTHO05D007436 3.5e-22 110.5 225 32.4
BcaC01g01117 Brassica carinata HOM05D005782 ORTHO05D027183 2.3e-21 107.8 308 33.4
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 4.0e-18 97.1 180 36.7
AUR62044085 Chenopodium quinoa HOM05D005782 ORTHO05D007436 2.0e-17 94.7 178 37.1
Dinv26495 Davidia involucrata HOM05D000001 ORTHO05D010280 1.0e-16 92.4 116 46.6
PRCOL_00003075 Prasinoderma coloniale HOM05D005782 ORTHO05D007436 1.3e-16 92.0 317 26.2
Actinidia02544 Actinidia chinensis HOM05D005782 ORTHO05D007436 2.7e-14 84.3 56 75.0
Lj5A796T24 Lonicera japonica HOM05D005782 ORTHO05D007436 1.8e-13 81.6 51 68.6
MBI15_g25469_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 4.3e-12 77.0 46 69.6
HPP92_020431 Vanilla planifolia HOM05D005782 ORTHO05D007436 5.7e-12 76.6 110 42.7
Solyc07g042810.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 5.3e-10 70.1 49 75.5
DCAR_032496 Daucus carota HOM05D006976 ORTHO05D008761 3.2e-07 60.8 106 27.4
SEGI_11203 Sequoiadendron giganteum HOM05D006976 ORTHO05D008761 1.6e-06 58.5 95 26.3
CAN.G129.10 Capsicum annuum HOM05D006976 ORTHO05D008761 3.5e-06 57.4 210 25.7


User provided reference genes

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