Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 4.6e-35 150.6 72 100.0
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 3.6e-11 71.2 58 58.6
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 1.0e-10 69.7 55 61.8
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 5.1e-10 67.4 57 56.1
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 1.5e-09 65.9 55 58.2
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 1.5e-09 65.9 57 54.4
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 2.0e-09 65.5 60 50.0
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 2.0e-09 65.5 60 50.0
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 2.0e-09 65.5 55 56.4
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 2.5e-09 65.1 55 58.2
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 2.5e-09 65.1 55 56.4
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 3.3e-09 64.7 55 56.4
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 4.3e-09 64.3 55 56.4
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 4.3e-09 64.3 55 56.4
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 4.3e-09 64.3 55 56.4
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 4.3e-09 64.3 55 56.4
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 52.7
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 7.4e-09 63.5 55 54.5
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 1.3e-08 62.8 55 54.5
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.3e-08 62.8 55 54.5
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.3e-08 62.8 55 54.5
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 1.3e-08 62.8 55 54.5
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 1.7e-08 62.4 55 54.5
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 1.7e-08 62.4 55 54.5
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 1.7e-08 62.4 55 54.5
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 1.7e-08 62.4 55 54.5
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 1.7e-08 62.4 55 56.4
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 2.2e-08 62.0 55 54.5
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 2.2e-08 62.0 43 62.8
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 2.2e-08 62.0 55 52.7
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 2.2e-08 62.0 55 52.7
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 2.8e-08 61.6 55 52.7
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 2.8e-08 61.6 60 48.3
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 2.8e-08 61.6 57 50.9
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 2.8e-08 61.6 55 52.7
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 2.8e-08 61.6 53 50.9
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 2.8e-08 61.6 41 65.9
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 2.8e-08 61.6 41 65.9
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 3.7e-08 61.2 55 52.7
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 3.7e-08 61.2 55 52.7
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 3.7e-08 61.2 55 50.9
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 4.8e-08 60.8 55 52.7
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 4.8e-08 60.8 61 45.9
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 4.8e-08 60.8 57 50.9
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 6.3e-08 60.5 55 54.5
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 6.3e-08 60.5 55 52.7
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 8.2e-08 60.1 41 61.0
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 8.2e-08 60.1 61 45.9
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 8.2e-08 60.1 58 48.3
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 8.2e-08 60.1 58 48.3
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.1e-07 59.7 41 63.4
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.1e-07 59.7 41 63.4
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 1.1e-07 59.7 55 50.9
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 1.4e-07 59.3 55 52.7
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 1.4e-07 59.3 55 50.9
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 1.4e-07 59.3 58 48.3
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 1.8e-07 58.9 55 49.1
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.8e-07 58.9 56 50.0
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 2.4e-07 58.5 55 50.9
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 2.4e-07 58.5 55 50.9
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 2.4e-07 58.5 55 50.9
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 2.4e-07 58.5 56 50.0
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 2.4e-07 58.5 55 50.9
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 2.4e-07 58.5 55 50.9
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 3.1e-07 58.2 55 49.1
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 3.1e-07 58.2 55 49.1
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 3.1e-07 58.2 55 49.1
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 3.1e-07 58.2 55 49.1
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 3.1e-07 58.2 55 49.1
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 4.1e-07 57.8 55 49.1
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 4.1e-07 57.8 55 49.1
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 4.1e-07 57.8 55 49.1
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 5.3e-07 57.4 58 46.6
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 5.3e-07 57.4 41 61.0
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 6.9e-07 57.0 55 50.9
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 9.1e-07 56.6 41 58.5
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 9.1e-07 56.6 55 49.1
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.2e-06 56.2 55 47.3
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 1.2e-06 56.2 55 49.1
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.5e-06 55.8 41 53.7
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.5e-06 55.8 41 53.7
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 1.5e-06 55.8 55 45.5
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 1.5e-06 55.8 55 47.3
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 2.6e-06 55.1 54 53.7
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 3.4e-06 54.7 55 47.3
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 3.4e-06 54.7 55 47.3
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 3.4e-06 54.7 55 47.3
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 4.5e-06 54.3 56 44.6
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 4.5e-06 54.3 44 52.3
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 4.5e-06 54.3 44 52.3
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 4.5e-06 54.3 44 52.3


User provided reference genes

Program Settings