Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0133700 Salix brachista HOM05D001012 ORTHO05D004721 5.8e-169 597.4 292 100.0
Potri.005G177100 Populus trichocarpa HOM05D001012 ORTHO05D004721 9.2e-58 228.0 129 89.1
Potri.002G084600 Populus trichocarpa HOM05D001012 ORTHO05D004721 7.1e-50 201.8 133 77.4
Dinv27323 Davidia involucrata HOM05D001012 ORTHO05D004721 4.6e-41 172.6 139 69.1
Gohir.D06G044800 Gossypium hirsutum HOM05D001012 ORTHO05D004721 1.0e-40 171.4 137 69.3
Gorai.010G049900 Gossypium raimondii HOM05D001012 ORTHO05D004721 1.0e-40 171.4 137 69.3
Gohir.A06G043900 Gossypium hirsutum HOM05D001012 ORTHO05D004721 1.3e-40 171.0 137 69.3
Manes.18G076400 Manihot esculenta HOM05D001012 ORTHO05D004721 3.0e-40 169.9 137 67.9
Dinv07228 Davidia involucrata HOM05D001012 ORTHO05D004721 2.5e-39 166.8 134 68.7
Cfa016009 Carpinus fangiana HOM05D001012 ORTHO05D004721 2.8e-38 163.3 135 66.7
TAR628G0697 Trochodendron aralioides HOM05D001012 ORTHO05D004721 2.8e-38 163.3 136 68.4
Nn5g28255 Nelumbo nucifera HOM05D001012 ORTHO05D004721 4.8e-38 162.5 134 68.7
Ciclev10002342m.g Citrus clementina HOM05D001012 ORTHO05D004721 4.0e-37 159.5 145 64.1
QL09p035232 Quercus lobata HOM05D001012 ORTHO05D004721 9.0e-37 158.3 133 66.2
Thecc.08G123900 Theobroma cacao HOM05D001012 ORTHO05D004721 1.5e-36 157.5 136 66.2
Prupe.1G499800 Prunus persica HOM05D001012 ORTHO05D004721 2.6e-36 156.8 136 66.2
Haze_00447 Corylus avellana HOM05D001012 ORTHO05D004721 7.6e-36 155.2 138 66.7
Nn1g08752 Nelumbo nucifera HOM05D001012 ORTHO05D004721 7.6e-36 155.2 138 66.7
CiPaw.06G030300 Carya illinoinensis HOM05D001012 ORTHO05D004721 3.8e-35 152.9 144 63.9
COL.COLO4_35939 Corchorus olitorius HOM05D001012 ORTHO05D004721 3.8e-35 152.9 136 66.2
TWI56G0260 Tripterygium wilfordii HOM05D001012 ORTHO05D004721 1.4e-34 151.0 132 62.9
Eucgr.F04356 Eucalyptus grandis HOM05D001012 ORTHO05D004721 4.2e-34 149.4 152 58.6
Atru.chr13.1443 Acer truncatum HOM05D001012 ORTHO05D004721 5.4e-34 149.1 138 61.6
Atru.chr13.1467 Acer truncatum HOM05D001012 ORTHO05D004721 5.4e-34 149.1 138 61.6
TAR376G0631 Trochodendron aralioides HOM05D001012 ORTHO05D004721 3.5e-33 146.4 132 65.2
Manes.02G162500 Manihot esculenta HOM05D001012 ORTHO05D004721 7.9e-33 145.2 136 63.2
Rhsim06G0104500 Rhododendron simsii HOM05D001012 ORTHO05D004721 7.9e-33 145.2 150 60.0
Gohir.D02G080600 Gossypium hirsutum HOM05D001012 ORTHO05D004721 1.8e-32 144.1 140 62.1
Gorai.005G090000 Gossypium raimondii HOM05D001012 ORTHO05D004721 1.8e-32 144.1 140 62.1
Actinidia02615 Actinidia chinensis HOM05D001012 ORTHO05D004721 2.3e-32 143.7 134 61.9
Gohir.A02G073300 Gossypium hirsutum HOM05D001012 ORTHO05D004721 3.9e-32 142.9 140 61.4
Sc01g0001170 Simmondsia chinensis HOM05D001012 ORTHO05D004721 1.1e-31 141.4 143 60.1
Oeu047948.1 Olea europaea HOM05D001012 ORTHO05D004721 4.3e-31 139.4 142 59.9
Hma1.2p1_0186F.1_g081740 Hydrangea macrophylla HOM05D001012 ORTHO05D004721 5.6e-31 139.0 139 59.0
Duzib116G0337 Durio zibethinus HOM05D001012 ORTHO05D004721 1.3e-30 137.9 140 59.3
Duzib041G0256 Durio zibethinus HOM05D001012 ORTHO05D004721 6.2e-30 135.6 142 58.5
Lj7A339T43 Lonicera japonica HOM05D001012 ORTHO05D004721 8.1e-30 135.2 137 59.1
CANSAT25G1368 Cannabis sativa HOM05D001012 ORTHO05D004721 1.1e-29 134.8 170 51.2
RcHm_v2.0_Chr6g0295651 Rosa chinensis HOM05D001012 ORTHO05D004721 2.4e-29 133.7 142 57.7
Aqoxy6G00201 Aquilegia oxysepala HOM05D001012 ORTHO05D004721 4.0e-29 132.9 142 57.0
Medtr3g072390 Medicago truncatula HOM05D001012 ORTHO05D004721 4.0e-29 132.9 137 57.7
Glyma.14G148800 Glycine max HOM05D001012 ORTHO05D004721 5.3e-29 132.5 136 59.6
PGR044G1962 Punica granatum HOM05D001012 ORTHO05D004721 6.9e-29 132.1 139 58.3
Lj1g0018062 Lotus japonicus HOM05D001012 ORTHO05D004721 1.2e-28 131.3 132 57.6
DCAR_014091 Daucus carota HOM05D001012 ORTHO05D004721 2.6e-28 130.2 140 58.6
DCAR_017422 Daucus carota HOM05D001012 ORTHO05D004721 3.4e-28 129.8 134 57.5
MSTRG.1450 Avicennia marina HOM05D001012 ORTHO05D004721 4.5e-28 129.4 134 57.5
Ca_15190_v3 Cicer arietinum L. HOM05D001012 ORTHO05D004721 4.5e-28 129.4 199 41.7
Phvul.008G163500 Phaseolus vulgaris HOM05D001012 ORTHO05D004721 5.8e-28 129.0 134 57.5
MSTRG.22411 Avicennia marina HOM05D001012 ORTHO05D004721 7.6e-28 128.6 137 56.2
FvH4_2g26790 Fragaria vesca HOM05D001012 ORTHO05D004721 1.3e-27 127.9 143 55.9
FAN24G0070 Fragaria x ananassa HOM05D001012 ORTHO05D004721 1.3e-27 127.9 143 55.9
VMungo0647G1614 Vigna mungo HOM05D001012 ORTHO05D004721 1.3e-27 127.9 131 57.3
Peaxi162Scf00051g00088 Petunia axillaris HOM05D001012 ORTHO05D004721 1.7e-27 127.5 136 57.4
FAN20G2917 Fragaria x ananassa HOM05D001012 ORTHO05D004721 2.2e-27 127.1 143 55.2
FAN27G2447 Fragaria x ananassa HOM05D001012 ORTHO05D004721 3.8e-27 126.3 143 55.2
Duzib093G1741 Durio zibethinus HOM05D001012 ORTHO05D004721 8.4e-27 125.2 88 73.9
TPR.G24051 Trifolium pratense HOM05D001012 ORTHO05D004721 8.4e-27 125.2 136 53.7
Glyma.13G080500 Glycine max HOM05D001012 ORTHO05D004721 1.9e-26 124.0 135 55.6
CiPaw.05G222700 Carya illinoinensis HOM05D001012 ORTHO05D004721 2.4e-26 123.6 87 72.4
MSTRG.25387 Avicennia marina HOM05D001012 ORTHO05D004721 3.2e-26 123.2 134 56.7
FAN15G0423 Fragaria x ananassa HOM05D001012 ORTHO05D004721 4.2e-26 122.9 166 50.6
Psat5g132040 Pisum sativum HOM05D001012 ORTHO05D004721 7.1e-26 122.1 139 55.4
Glyma.04G250100 Glycine max HOM05D001012 ORTHO05D004721 1.2e-25 121.3 129 54.3
SalBow6G4285 Salvia bowleyana HOM05D001012 ORTHO05D004721 1.6e-25 120.9 134 53.7
SalBow6G5549 Salvia bowleyana HOM05D001012 ORTHO05D004721 1.6e-25 120.9 134 53.7
MELO3C010604.2 Cucumis melo HOM05D001012 ORTHO05D004721 2.7e-25 120.2 142 51.4
Lj1g0008844 Lotus japonicus HOM05D001012 ORTHO05D004721 6.0e-25 119.0 135 53.3
CAN.G1040.12 Capsicum annuum HOM05D001012 ORTHO05D004721 2.3e-24 117.1 143 54.5
AUR62019046 Chenopodium quinoa HOM05D001012 ORTHO05D004721 3.0e-24 116.7 143 51.7
Hund27022 Selenicereus undatus HOM05D001012 ORTHO05D004721 3.0e-24 116.7 134 50.0
Glyma.06G112700 Glycine max HOM05D001012 ORTHO05D004721 5.1e-24 115.9 129 52.7
Lalb_Chr10g0101771 Lupinus albus HOM05D001012 ORTHO05D004721 6.7e-24 115.5 131 51.1
Lalb_Chr17g0343781 Lupinus albus HOM05D001012 ORTHO05D004721 6.7e-24 115.5 127 50.4
AUR62027886 Chenopodium quinoa HOM05D001012 ORTHO05D004721 1.9e-23 114.0 143 50.3
CSS0029014 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D004721 2.5e-23 113.6 143 54.5
PGSC0003DMG400017558 Solanum tuberosum HOM05D001012 ORTHO05D004721 2.5e-23 113.6 142 51.4
Solyc06g060360.3 Solanum lycopersicum HOM05D001012 ORTHO05D004721 3.3e-23 113.2 142 51.4
MSTRG.24168 Avicennia marina HOM05D001012 ORTHO05D004721 4.3e-23 112.8 88 64.8
Ah.05g170850 Amaranthus hybridus HOM05D001012 ORTHO05D004721 5.6e-23 112.5 131 51.9
Cpa.g.sc36.57 Carica papaya HOM05D001012 ORTHO05D004721 5.6e-23 112.5 128 57.0
CsaV3_6G034520 Cucumis sativus L. HOM05D001012 ORTHO05D004721 5.6e-23 112.5 142 50.0
Lsat_1_v5_gn_1_9861 Lactuca sativa HOM05D001012 ORTHO05D004721 7.4e-23 112.1 144 52.1
Lalb_Chr11g0065861 Lupinus albus HOM05D001012 ORTHO05D004721 9.6e-23 111.7 139 49.6
MBI09_g45357_MAGBIO Magnolia biondii HOM05D001012 ORTHO05D004721 1.3e-22 111.3 94 59.6
VMungo1309G2608 Vigna mungo HOM05D001012 ORTHO05D004721 1.6e-22 110.9 86 64.0
arahy.Tifrunner.gnm1.ann1.QHVB9K Arachis hypogaea HOM05D001012 ORTHO05D004721 2.1e-22 110.5 136 51.5
ClCG08G005620 Citrullus lanatus HOM05D001012 ORTHO05D004721 3.7e-22 109.8 139 50.4
PSO170G4789 Papaver somniferum HOM05D001012 ORTHO05D004721 4.8e-22 109.4 153 49.7
Sopen06g020500 Solanum pennellii HOM05D001012 ORTHO05D004721 6.2e-22 109.0 142 50.0
Migut.C01137 Erythranthe guttata HOM05D001012 ORTHO05D004721 1.1e-21 108.2 137 52.6
PSO528G0066 Papaver somniferum HOM05D001012 ORTHO05D004721 1.4e-21 107.8 153 49.0
Sed0016510 Sechium edule HOM05D001012 ORTHO05D004721 2.4e-21 107.1 143 46.9
EL10Ac1g01053 Beta vulgaris HOM05D001012 ORTHO05D004721 3.1e-21 106.7 144 51.4
arahy.Tifrunner.gnm1.ann1.C03EZ9 Arachis hypogaea HOM05D001012 ORTHO05D004721 4.0e-21 106.3 138 51.4
BcaC08g42862 Brassica carinata HOM05D001012 ORTHO05D004721 9.0e-21 105.1 132 50.0
C06p00720 Brassica napus HOM05D001012 ORTHO05D004721 9.0e-21 105.1 132 50.0
BolC6t35213H Brassica oleracea HOM05D001012 ORTHO05D004721 9.0e-21 105.1 132 50.0
CARHR036010 Cardamine hirsuta HOM05D001012 ORTHO05D004721 9.0e-21 105.1 133 48.9
MD15G1350900 Malus domestica HOM05D001012 ORTHO05D004721 9.0e-21 105.1 144 50.7
AL1G52420 Arabidopsis lyrata HOM05D001012 ORTHO05D004721 1.2e-20 104.8 135 50.4
CDE02G3226 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 1.5e-20 104.4 128 49.2
Oeu050914.2 Olea europaea HOM05D001012 ORTHO05D004721 2.0e-20 104.0 119 52.9
BraSC36t46067Z Brassica rapa HOM05D001012 ORTHO05D004721 2.6e-20 103.6 132 49.2
THA.LOC104817291 Tarenaya hassleriana HOM05D001012 ORTHO05D004721 2.6e-20 103.6 138 49.3
Phvul.009G124600 Phaseolus vulgaris HOM05D001012 ORTHO05D004721 4.5e-20 102.8 86 62.8
ClCG11G015690 Citrullus lanatus HOM05D001012 ORTHO05D004721 5.8e-20 102.4 87 63.2
CDE06G0137 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 7.6e-20 102.1 93 61.3
A10p07390 Brassica napus HOM05D001012 ORTHO05D004721 1.0e-19 101.7 132 48.5
CsaV3_4G028320 Cucumis sativus L. HOM05D001012 ORTHO05D004721 1.0e-19 101.7 89 61.8
AT1G44760 Arabidopsis thaliana HOM05D001012 ORTHO05D004721 1.3e-19 101.3 137 49.6
Carub.0001s3528 Capsella rubella HOM05D001012 ORTHO05D004721 1.7e-19 100.9 135 50.4
CDE08G0101 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 1.7e-19 100.9 127 47.2
A08p06350 Brassica napus HOM05D001012 ORTHO05D004721 2.2e-19 100.5 132 48.5
BraA08t32643Z Brassica rapa HOM05D001012 ORTHO05D004721 2.2e-19 100.5 132 48.5
MELO3C010473.2 Cucumis melo HOM05D001012 ORTHO05D004721 2.2e-19 100.5 88 61.4
Nitab4.5_0004882g0010 Nicotiana tabacum HOM05D001012 ORTHO05D004721 2.2e-19 100.5 142 48.6
Sp1g33620 Schrenkiella parvula HOM05D001012 ORTHO05D004721 3.8e-19 99.8 131 47.3
SalBow7G2417 Salvia bowleyana HOM05D001012 ORTHO05D004721 6.5e-19 99.0 129 49.6
SGA_v2.0_scaffold52G18973 Striga asiatica HOM05D001012 ORTHO05D004721 6.5e-19 99.0 131 47.3
SGA_v2.0_scaffold28G12002 Striga asiatica HOM05D001012 ORTHO05D004721 1.4e-18 97.8 135 45.9
Thhalv10011770m.g Eutrema salsugineum HOM05D001012 ORTHO05D004721 1.9e-18 97.4 133 47.4
Nitab4.5_0000633g0210 Nicotiana tabacum HOM05D001012 ORTHO05D004721 5.5e-18 95.9 134 50.0
FAN15G3370 Fragaria x ananassa HOM05D001012 ORTHO05D004721 7.1e-18 95.5 126 49.2
Lj4A623T14 Lonicera japonica HOM05D001012 ORTHO05D004721 9.3e-18 95.1 67 71.6
Sed0010314 Sechium edule HOM05D001012 ORTHO05D004721 9.3e-18 95.1 87 59.8
BcaC07g37287 Brassica carinata HOM05D001012 ORTHO05D004721 2.1e-17 94.0 141 46.1
C08p07180 Brassica napus HOM05D001012 ORTHO05D004721 2.1e-17 94.0 141 46.1
BolC8t47562H Brassica oleracea HOM05D001012 ORTHO05D004721 2.1e-17 94.0 141 46.1
BcaB07g33932 Brassica carinata HOM05D001012 ORTHO05D004721 2.7e-17 93.6 121 46.3
BcaB04g17586 Brassica carinata HOM05D001012 ORTHO05D004721 3.5e-17 93.2 131 45.8
unitig_0.g2118 Utricularia gibba HOM05D001012 ORTHO05D004721 6.0e-17 92.4 126 46.0
Aa31LG6G9310 Aethionema arabicum HOM05D001012 ORTHO05D004721 7.9e-17 92.0 133 45.1
unitig_747.g21492 Utricularia gibba HOM05D001012 ORTHO05D004721 7.9e-17 92.0 129 48.1
Thecc.07G143400 Theobroma cacao HOM05D001012 ORTHO05D004721 1.0e-16 91.7 60 75.0
Zm00001eb288570 Zea mays HOM05D001012 ORTHO05D004721 2.3e-16 90.5 71 63.4
ATR1134G024 Amborella trichopoda HOM05D001012 ORTHO05D004721 3.9e-16 89.7 109 48.6
CDE08G0999 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 6.7e-16 89.0 87 56.3
HPP92_025161 Vanilla planifolia HOM05D001012 ORTHO05D004721 3.3e-15 86.7 138 42.8
Zm00001eb146130 Zea mays HOM05D001012 ORTHO05D004721 3.3e-15 86.7 70 62.9
Migut.N03286 Erythranthe guttata HOM05D001012 ORTHO05D004721 5.7e-15 85.9 68 63.2
Os05g0428400 Oryza sativa ssp. japonica HOM05D001012 ORTHO05D004721 5.7e-15 85.9 71 62.0
HanXRQChr04g0125221 Helianthus annuus HOM05D001012 ORTHO05D004721 1.3e-14 84.7 150 43.3
MD08G1165100 Malus domestica HOM05D001012 ORTHO05D004721 1.6e-14 84.3 147 44.9
unitig_46.g18126 Utricularia gibba HOM05D001012 ORTHO05D004721 2.8e-14 83.6 78 55.1
vmacro12535 Vaccinium macrocarpon HOM05D001012 ORTHO05D004721 1.4e-13 81.3 82 59.8
Os01g0875300 Oryza sativa ssp. japonica HOM05D001012 ORTHO05D004721 3.1e-13 80.1 63 63.5
Zm00001eb366440 Zea mays HOM05D001012 ORTHO05D004721 3.1e-13 80.1 63 61.9
GSVIVG01008879001 Vitis vinifera HOM05D001012 ORTHO05D004721 5.3e-13 79.3 54 74.1
Cc00_g04270 Coffea canephora HOM05D001012 ORTHO05D004721 6.9e-13 79.0 53 73.6
Zm00001eb348850 Zea mays HOM05D001012 ORTHO05D004721 1.5e-12 77.8 65 56.9
Lalb_Chr04g0253411 Lupinus albus HOM05D001012 ORTHO05D004721 2.0e-12 77.4 74 58.1
HPP92_011932 Vanilla planifolia HOM05D001012 ORTHO05D004721 2.0e-12 77.4 78 46.2
HPP92_013747 Vanilla planifolia HOM05D001012 ORTHO05D004721 5.9e-12 75.9 134 39.6
SEGI_02961 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 6.5e-11 72.4 267 31.1
HanXRQChr10g0313231 Helianthus annuus HOM05D001012 ORTHO05D004721 8.5e-11 72.0 78 51.3
Hund16855 Selenicereus undatus HOM05D001012 ORTHO05D004721 2.7e-09 67.0 94 45.7
SalBow2G2442 Salvia bowleyana HOM05D001012 ORTHO05D002597 3.0e-08 63.5 84 33.3
Oeu048130.1 Olea europaea HOM05D001012 ORTHO05D002597 6.7e-08 62.4 76 36.8
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 4.3e-07 59.7 82 35.4
Hma1.2p1_0428F.1_g151030 Hydrangea macrophylla HOM05D001012 ORTHO05D002597 7.4e-07 58.9 79 34.2
FvH4_4g29580 Fragaria vesca HOM05D001012 ORTHO05D002597 1.3e-06 58.2 84 33.3
FAN07G1604 Fragaria x ananassa HOM05D001012 ORTHO05D002597 1.3e-06 58.2 84 33.3
FAN07G2555 Fragaria x ananassa HOM05D001012 ORTHO05D002597 1.3e-06 58.2 84 33.3
FAN12G4325 Fragaria x ananassa HOM05D001012 ORTHO05D002597 1.3e-06 58.2 84 33.3
SEGI_09085 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 1.3e-06 58.2 144 31.9
FAN17G2431 Fragaria x ananassa HOM05D001012 ORTHO05D002597 1.6e-06 57.8 84 33.3
Prupe.1G290800 Prunus persica HOM05D001012 ORTHO05D002597 1.6e-06 57.8 96 34.4
SEGI_13166 Sequoiadendron giganteum HOM05D001012 ORTHO05D002597 1.6e-06 57.8 80 40.0
Actinidia13401 Actinidia chinensis HOM05D001012 ORTHO05D002597 2.2e-06 57.4 104 30.8
BraA09t38049Z Brassica rapa HOM05D001012 ORTHO05D002597 2.2e-06 57.4 126 34.1
RcHm_v2.0_Chr4g0437821 Rosa chinensis HOM05D001012 ORTHO05D002597 2.2e-06 57.4 84 33.3
Sed0023361 Sechium edule HOM05D001012 ORTHO05D002597 2.2e-06 57.4 80 36.2
SEGI_39498 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 3.7e-06 56.6 122 39.3
Carub.0005s0284 Capsella rubella HOM05D001012 ORTHO05D002597 4.8e-06 56.2 128 32.8
Glyma.02G121800 Glycine max HOM05D001012 ORTHO05D002597 4.8e-06 56.2 79 35.4
SEGI_12548 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 4.8e-06 56.2 97 38.1
Rhsim09G0124600 Rhododendron simsii HOM05D001012 ORTHO05D002597 8.2e-06 55.5 88 33.0
SGA_v2.0_scaffold59G20661 Striga asiatica HOM05D001012 ORTHO05D002597 8.2e-06 55.5 87 32.2


User provided reference genes

Program Settings