Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 3.2e-204 714.9 372 100.0
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 8.2e-160 567.4 372 78.8
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.5e-153 545.8 372 76.3
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.9e-149 532.3 372 75.0
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 2.0e-145 519.6 372 72.0
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 2.6e-145 519.2 372 71.5
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 3.3e-145 518.8 372 72.0
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.4e-143 512.7 372 70.7
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.0e-142 509.6 372 69.6
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 3.4e-142 508.8 369 71.8
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 4.5e-142 508.4 372 70.4
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 2.9e-141 505.8 372 71.0
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 2.9e-141 505.8 372 70.4
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 5.0e-141 505.0 372 69.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 5.5e-140 501.5 372 69.4
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.2e-139 500.4 372 69.4
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 1.2e-139 500.4 372 70.4
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.6e-139 500.0 372 69.1
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.7e-139 499.2 372 69.6
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 2.7e-139 499.2 372 69.9
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 4.7e-139 498.4 372 69.9
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 4.7e-139 498.4 374 69.3
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 4.7e-139 498.4 372 69.6
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 7.9e-139 497.7 372 69.1
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.0e-138 497.3 372 69.6
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.0e-138 497.3 372 68.5
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.0e-138 497.3 372 69.1
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.4e-138 496.9 372 67.7
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.4e-138 496.9 372 69.1
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.8e-138 496.5 372 68.8
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.3e-138 496.1 372 67.5
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 3.0e-138 495.7 372 67.7
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.0e-138 495.7 371 68.7
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.0e-138 495.7 372 68.8
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 3.9e-138 495.4 372 69.1
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 5.2e-138 495.0 372 69.4
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 5.2e-138 495.0 372 68.8
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.7e-138 494.6 372 68.5
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 6.7e-138 494.6 372 69.4
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 6.7e-138 494.6 372 66.9
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.1e-137 493.8 372 67.5
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.5e-137 493.4 372 68.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.5e-137 493.4 372 68.8
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.5e-137 493.4 372 68.0
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.6e-137 492.7 372 68.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.3e-137 492.3 372 68.8
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 4.4e-137 491.9 372 68.5
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 7.4e-137 491.1 372 68.8
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 7.4e-137 491.1 372 67.7
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 7.4e-137 491.1 372 67.7
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.3e-136 490.3 372 68.5
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.3e-136 490.3 369 68.8
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.3e-136 490.3 372 68.8
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.3e-136 490.3 372 67.7
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.7e-136 490.0 372 68.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.2e-136 489.6 372 67.2
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 2.2e-136 489.6 372 68.5
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.2e-136 489.6 372 66.7
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 2.8e-136 489.2 372 68.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 8.2e-136 487.6 372 67.2
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.8e-135 486.5 372 67.7
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.4e-135 486.1 375 68.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 4.1e-135 485.3 372 66.7
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 5.3e-135 485.0 372 66.9
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 5.3e-135 485.0 388 66.8
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.1e-135 484.2 369 67.5
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.0e-134 483.0 372 66.1
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 2.0e-134 483.0 372 66.9
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.5e-134 482.3 372 66.7
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 4.5e-134 481.9 367 67.3
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 5.9e-134 481.5 372 67.2
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.7e-133 479.9 372 66.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.9e-133 479.2 372 66.9
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.9e-133 479.2 372 66.1
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.1e-132 477.2 372 66.1
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.5e-132 476.9 372 66.1
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.9e-132 476.5 370 66.8
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.9e-132 476.5 370 66.2
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 4.2e-132 475.3 372 65.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 9.4e-132 474.2 372 65.1
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.6e-131 473.4 372 65.1
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 8.0e-131 471.1 370 65.9
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.0e-130 470.7 370 65.7
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.8e-130 469.9 372 65.6
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.3e-130 469.5 369 66.9
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 8.8e-130 467.6 372 64.2
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.5e-129 466.8 374 65.5
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.3e-129 465.7 372 64.8
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 2.8e-128 462.6 374 64.7
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 3.7e-128 462.2 371 63.1
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 3.7e-128 462.2 372 63.2
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 4.8e-128 461.8 372 64.2
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 8.2e-128 461.1 374 64.7
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 1.1e-127 460.7 374 65.0
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 1.4e-127 460.3 372 65.3
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 9.1e-127 457.6 373 64.3
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 9.1e-127 457.6 373 64.3
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 9.1e-127 457.6 373 64.3
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.0e-126 456.4 372 62.6
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.3e-125 453.8 373 64.1
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.7e-125 453.4 371 64.4
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 3.8e-125 452.2 374 63.6
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 5.0e-125 451.8 372 63.7
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.5e-124 449.5 372 62.6
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.6e-123 446.8 371 62.8
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 5.7e-121 438.3 371 61.2
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 9.8e-121 437.6 371 60.9
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 9.8e-121 437.6 371 60.9
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.4e-119 433.7 372 61.8
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.4e-119 433.0 371 60.4
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.4e-111 405.2 371 57.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 9.2e-111 404.4 373 56.3
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 7.8e-110 401.4 367 57.8
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 7.3e-108 394.8 371 55.3
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.4e-103 380.6 372 57.3
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 7.0e-103 378.3 328 62.5
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 3.9e-101 372.5 302 65.2
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 2.1e-99 366.7 370 52.4
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 2.1e-99 366.7 232 79.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 4.7e-99 365.5 224 79.0
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.1e-95 354.4 370 50.8
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 5.2e-90 335.5 209 77.0
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.5e-89 334.0 378 48.9
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.0e-89 333.6 223 75.3
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 2.6e-65 253.4 181 70.7
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.6e-59 234.2 210 60.0
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 3.7e-59 233.0 257 52.9
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 4.0e-58 229.6 154 74.7
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 3.4e-57 226.5 216 56.5
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 6.4e-56 222.2 153 70.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 2.9e-48 196.8 360 40.0
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.4e-39 167.9 137 59.1
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.9e-39 167.5 86 88.4
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.8e-37 161.0 125 66.4
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 6.7e-37 159.1 80 86.2
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 8.7e-37 158.7 80 88.8
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.9e-36 157.5 80 88.8
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.5e-36 157.1 79 88.6
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 3.7e-35 153.3 202 48.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 3.0e-29 133.7 79 78.5
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.8e-27 127.1 366 29.5
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 2.4e-26 124.0 372 29.0
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 8.5e-24 115.5 76 71.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 7.2e-23 112.5 58 86.2
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 8.8e-21 105.5 64 76.6
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.4e-18 98.2 60 78.3
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 8.8e-13 79.0 64 68.8
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.6e-09 68.2 103 37.9
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.9e-07 61.2 363 24.0


User provided reference genes

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