Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 2.6e-141 505.4 257 100.0
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.7e-132 476.1 252 95.6
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 5.9e-101 371.3 253 77.5
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 4.0e-97 358.6 252 73.8
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 7.0e-94 347.8 228 75.4
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 3.5e-93 345.5 252 71.0
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 5.9e-93 344.7 252 70.2
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 7.8e-93 344.4 252 71.8
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 5.0e-92 341.7 252 69.8
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.9e-91 339.7 255 70.2
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 1.9e-91 339.7 252 70.2
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.5e-91 339.3 252 70.6
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 4.3e-91 338.6 255 69.8
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 9.5e-91 337.4 257 70.4
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 4.7e-90 335.1 256 69.5
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 3.1e-89 332.4 252 69.0
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 3.1e-89 332.4 252 68.7
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 5.2e-89 331.6 220 75.5
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 6.8e-89 331.3 253 68.8
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 6.8e-89 331.3 222 73.9
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 6.8e-89 331.3 252 67.5
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 6.8e-89 331.3 221 74.2
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.2e-88 330.5 254 70.1
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.0e-88 329.7 253 67.6
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.0e-88 329.7 253 67.6
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.6e-88 329.3 253 67.6
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.6e-88 329.3 257 66.1
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.6e-88 329.3 256 67.2
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 5.8e-88 328.2 213 76.5
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 5.8e-88 328.2 225 74.7
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 5.8e-88 328.2 256 67.6
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 5.8e-88 328.2 251 67.3
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 7.5e-88 327.8 219 75.3
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 9.8e-88 327.4 253 66.4
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 1.3e-87 327.0 253 66.4
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.3e-87 327.0 255 69.0
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 1.3e-87 327.0 224 73.2
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 1.7e-87 326.6 220 74.5
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 3.7e-87 325.5 224 73.2
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 4.9e-87 325.1 224 73.7
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.1e-86 323.9 256 68.4
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 2.4e-86 322.8 185 82.7
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 2.4e-86 322.8 253 65.6
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 3.2e-86 322.4 222 71.2
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.2e-86 322.4 255 64.3
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 5.4e-86 321.6 256 68.4
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 9.2e-86 320.9 256 66.8
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 1.6e-85 320.1 252 65.5
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.6e-85 320.1 212 74.5
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 2.7e-85 319.3 221 73.3
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 3.5e-85 318.9 258 67.1
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 4.6e-85 318.5 233 67.0
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 4.6e-85 318.5 219 71.7
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.6e-85 318.5 254 65.7
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 6.0e-85 318.2 221 72.4
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.0e-84 317.4 210 74.3
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.3e-84 317.0 200 76.5
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.3e-84 317.0 210 74.8
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.3e-84 317.0 221 71.9
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 1.7e-84 316.6 220 71.8
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 1.7e-84 316.6 220 70.9
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.3e-84 316.2 225 71.1
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 3.9e-84 315.5 231 71.0
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 8.6e-84 314.3 222 70.7
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.5e-83 313.5 258 65.5
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.9e-83 313.2 254 65.0
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 5.6e-83 311.6 252 63.9
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 5.6e-83 311.6 252 63.9
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 5.6e-83 311.6 252 63.9
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 5.6e-83 311.6 252 63.9
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 5.6e-83 311.6 252 63.9
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 5.6e-83 311.6 254 65.4
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.6e-82 310.1 219 72.1
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.8e-82 309.3 256 64.5
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 3.6e-82 308.9 219 71.7
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 8.1e-82 307.8 221 71.5
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.1e-81 307.4 185 78.4
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.8e-81 306.6 219 71.2
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 5.2e-81 305.1 254 64.2
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 2.6e-80 302.8 194 78.9
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.6e-80 302.8 258 58.5
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 3.4e-80 302.4 254 65.4
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.9e-79 299.3 257 64.2
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 4.9e-79 298.5 223 66.4
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 2.4e-78 296.2 254 58.3
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 3.2e-78 295.8 189 78.3
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 7.1e-78 294.7 187 73.3
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 2.7e-77 292.7 257 62.6
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 3.5e-77 292.4 191 70.7
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 6.0e-77 291.6 192 69.8
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 7.8e-77 291.2 193 72.0
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.7e-76 290.0 190 74.7
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 3.0e-76 289.3 252 60.7
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 6.6e-76 288.1 192 73.4
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.9e-75 286.6 234 65.0
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.9e-75 286.6 170 81.2
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 3.3e-75 285.8 221 66.1
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 3.6e-74 282.3 256 57.4
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 3.6e-74 282.3 231 65.8
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 5.2e-73 278.5 219 66.2
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.4e-72 275.8 219 65.3
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 5.8e-72 275.0 254 61.4
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.3e-71 273.9 220 65.0
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 8.4e-71 271.2 172 77.3
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.5e-69 265.8 169 76.3
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 3.0e-68 262.7 152 80.9
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 4.7e-66 255.4 227 63.9
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.5e-64 250.4 153 76.5
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 4.4e-64 248.8 257 54.1
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 2.3e-60 236.5 153 75.8
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 7.1e-54 214.9 163 65.0
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 9.3e-54 214.5 126 79.4
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.9e-51 206.8 122 77.9
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 3.7e-50 202.6 221 48.0
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 5.3e-49 198.7 180 52.8
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 5.5e-46 188.7 231 42.9
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 7.1e-46 188.3 119 77.3
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 3.5e-45 186.0 104 79.8
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.9e-43 180.3 185 48.1
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 3.3e-43 179.5 101 81.2
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 1.8e-41 173.7 171 49.1
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.9e-38 163.7 155 62.6
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 2.2e-26 123.6 99 60.6
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 4.8e-26 122.5 99 66.7
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.8e-25 120.6 99 58.6
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 3.1e-25 119.8 82 64.6
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 1.1e-22 111.3 143 37.8
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 5.1e-20 102.4 71 64.8
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.0e-16 90.5 122 52.5
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 2.6e-16 90.1 193 31.1
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.1e-14 84.7 56 66.1
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.6e-11 73.6 50 68.0
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 7.4e-11 72.0 47 72.3
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.8e-10 70.1 97 43.3
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.8e-09 67.4 40 72.5
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 5.0e-07 59.3 52 50.0


User provided reference genes

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