Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 7.1e-110 400.6 199 100.0
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 5.6e-99 364.4 235 80.9
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.2e-85 320.1 225 74.2
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 1.1e-83 313.5 231 71.9
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 6.3e-66 254.6 228 59.2
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 4.6e-61 238.4 237 54.9
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 5.1e-60 235.0 228 55.7
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 5.1e-60 235.0 228 55.7
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 4.4e-59 231.9 235 56.2
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 5.7e-59 231.5 238 53.4
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 4.8e-58 228.4 233 54.1
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 5.3e-57 224.9 234 55.1
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 5.9e-56 221.5 222 53.6
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 6.5e-55 218.0 234 54.7
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 1.4e-54 216.9 240 51.7
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 2.5e-54 216.1 250 50.8
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 4.2e-54 215.3 241 51.9
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 9.4e-54 214.2 231 54.1
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.1e-53 213.0 248 50.4
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 2.1e-53 213.0 241 47.7
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.6e-53 212.2 248 50.0
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.7e-53 211.8 248 50.4
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 4.7e-53 211.8 243 51.0
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.4e-52 210.3 248 50.0
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.8e-52 209.9 248 48.8
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.0e-52 209.1 248 49.6
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 3.9e-52 208.8 236 53.4
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 8.8e-52 207.6 242 50.0
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 8.8e-52 207.6 211 53.6
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 1.1e-51 207.2 245 49.4
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 1.5e-51 206.8 238 51.7
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 3.3e-51 205.7 237 49.4
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 4.4e-51 205.3 234 47.4
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 4.4e-51 205.3 211 53.1
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 4.4e-51 205.3 236 49.6
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 5.7e-51 204.9 227 48.9
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 9.7e-51 204.1 240 51.7
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 4.8e-50 201.8 240 46.2
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 6.3e-50 201.4 231 47.6
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 8.2e-50 201.1 235 48.5
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 1.1e-49 200.7 234 50.9
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 1.4e-49 200.3 227 51.5
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 1.8e-49 199.9 236 47.0
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.8e-49 199.9 232 46.6
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 2.4e-49 199.5 234 47.0
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 2.4e-49 199.5 236 47.0
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 2.4e-49 199.5 222 50.9
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 5.3e-49 198.4 237 46.8
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 7.0e-49 198.0 237 50.2
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 2.6e-48 196.1 232 46.6
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 2.6e-48 196.1 234 51.3
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 4.5e-48 195.3 225 46.2
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 4.5e-48 195.3 238 46.6
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 5.9e-48 194.9 239 46.9
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 7.7e-48 194.5 232 47.0
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 1.0e-47 194.1 230 48.3
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 1.3e-47 193.7 200 54.0
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 1.7e-47 193.4 232 46.6
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 3.8e-47 192.2 234 45.7
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 3.8e-47 192.2 229 47.6
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 4.2e-46 188.7 238 47.5
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 5.5e-46 188.3 229 46.7
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 7.2e-46 188.0 187 52.4
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 7.2e-46 188.0 239 45.6
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 9.4e-46 187.6 235 47.2
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 2.7e-45 186.0 248 46.4
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 3.6e-45 185.7 236 46.6
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 4.7e-45 185.3 228 45.6
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 1.8e-44 183.3 182 54.9
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 3.0e-44 182.6 185 54.1
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 1.2e-43 180.6 244 48.0
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 2.0e-43 179.9 245 43.7
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 2.6e-43 179.5 235 46.8
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 7.5e-43 177.9 207 46.9
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 9.7e-43 177.6 235 43.4
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 9.7e-43 177.6 228 46.5
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 9.7e-43 177.6 246 43.1
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 4.8e-42 175.3 244 43.4
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 6.3e-42 174.9 223 46.2
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 1.4e-41 173.7 222 45.9
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 2.0e-40 169.9 254 41.7
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 5.9e-40 168.3 175 49.7
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 7.7e-40 167.9 215 46.0
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 1.0e-39 167.5 256 41.4
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 1.3e-39 167.2 237 43.9
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 1.7e-39 166.8 238 41.6
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.2e-39 166.4 235 44.7
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 8.5e-39 164.5 232 44.4
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 4.7e-37 158.7 214 45.3
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 5.7e-35 151.8 181 44.8
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 5.7e-35 151.8 206 43.7
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 1.7e-31 140.2 183 45.9
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.5e-30 137.1 141 51.8
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 2.5e-30 136.3 203 39.4
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 1.6e-29 133.7 186 41.9
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 4.0e-28 129.0 183 43.7
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 8.8e-28 127.9 185 41.1
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 4.4e-27 125.6 196 38.3
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 4.9e-26 122.1 199 42.2
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.4e-25 119.8 189 42.9
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.4e-25 119.8 189 42.9
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 1.5e-22 110.5 182 37.4
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 2.7e-16 89.7 119 42.9
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 2.7e-16 89.7 119 42.9
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 5.9e-16 88.6 119 42.0
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 3.0e-15 86.3 140 39.3
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.0e-15 86.3 121 46.3
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 3.9e-15 85.9 134 42.5
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 5.6e-14 82.0 125 42.4
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.6e-13 80.5 131 38.9
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 1.6e-13 80.5 122 42.6
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 2.8e-13 79.7 143 37.1
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 4.7e-13 79.0 150 37.3
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 4.7e-13 79.0 111 47.7
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 1.4e-12 77.4 127 40.9
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 2.3e-12 76.6 127 37.8
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 3.1e-12 76.3 125 42.4
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 3.1e-12 76.3 140 37.9
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 1.7e-10 70.5 126 39.7
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 4.9e-10 68.9 139 36.7
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 6.4e-10 68.6 113 40.7
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 1.1e-09 67.8 63 55.6
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 5.4e-09 65.5 49 69.4
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 7.0e-09 65.1 138 34.8
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 3.3e-06 56.2 41 68.3


User provided reference genes

Program Settings